KEGG   Beutenbergia cavernae: Bcav_0653Help
Entry
Bcav_0653         CDS       T00893                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bcv  Beutenbergia cavernae
Pathway
bcv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bcv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Bcav_0653
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcv03400]
    Bcav_0653
Enzymes [BR:bcv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bcav_0653
DNA repair and recombination proteins [BR:bcv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Bcav_0653
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ACQ78915
UniProt: C5BY21
LinkDB All DBs
Position
727701..730151
Genome map
AA seq 816 aa AA seqDB search
MAAGDGGARVRVDGRVLSLTNLDKVLFPATGTTKAELIDYYRRIAPVMIPHLAGRAVTRK
RWPNGVETEPFFTKNLDSGTPDWVPRRGIVHHERTSTYPLVEDTATLVWLAQMASIELHV
PQWRFPPGDSPFVLDGSATRPDRFVLDLDPGPGVGLAQCAEVALAAKGYLDDVGLAAIPV
TSGSKGLHLYATIHGVSSEQASAFAKELAGHLAEDLPQLVVTQMKRSLRDGKVFVDYSQN
NAAKTTVSPYSVRGRDQPWVAAPRTWGELGEPGLAHLELGEVLERAADGDLLAPLLPPDP
LSTYRAKRDSARTPEPVPFAAPVAAPAGDPRFVIQEHHARRLHWDLRLEHDGVLASWAVP
RGVPTTTGHNRLAVHTEDHPMEYLTFHGSIPKGEYGGGEMTVWDTGTYTPEKFRDDEVIF
VLHGQRVQGRFALIRTDPGRGGGKEQWLLHLMKDQSGVATSPEKRAHAVVDAPDAAADDG
AHISLSDAVEPRRIAPDLRPMLATAGQVGDGDYPAREWAFEPKWDGYRALVRFSARGVAL
QSRSGRDFTQEFAELAVVPEELAAHAGVLDAEIVALDAAGRPSFHALQERGTGARPAMRL
LVFDVLHLDGTSLVNKRYSDRRQVLLALPLPAADPDHLGREERDVGGWRRSVTIGTSVRA
ALRASAEARLEGVIAKRLDARYLPGRRGHAWVKLKHSLDAEVVIGGWRPGQGRRAGGIGS
LLLGVPDDDGGLRYVGKVGTGFTDAALDALLATLEPRERTTSPFTTEVPRVEAKVAHWVR
PDVVGEVTFDSWTDDGVLRAARWRGLRPDKAPADLA
NT seq 2451 nt NT seq  +upstreamnt  +downstreamnt
gtggcagcgggtgacggcggcgcgcgggtacgcgtcgacggccgcgtgctctcgctgacc
aacctcgacaaggtcctgttcccggccacgggcaccacgaaggccgagctcatcgactac
taccggcggatcgctccggtgatgatcccgcacctcgcgggccgcgccgtgacgcgcaag
cgctggccgaacggcgtcgagaccgagccgttcttcacgaagaacctcgactccgggacg
cccgactgggtgccgcgccgcgggatcgtccaccacgagcggaccagcacgtacccgctg
gtggaggacacggccacgctcgtgtggctcgcgcagatggccagcatcgagctgcacgtg
ccgcagtggcgcttcccgccgggtgactcaccgttcgtgctcgacgggagcgccacgcgg
cccgaccggttcgtgctcgacctcgacccgggccccggcgtcgggctcgcgcagtgcgcg
gaggtggcgctcgcggcgaaggggtacctcgacgacgtcgggctcgccgccatccccgtg
acgagcggcagcaagggcctgcacctgtacgccacgatccacggcgtcagctcggagcag
gcgagcgcgttcgcgaaggagctggccgggcacctcgcggaggaccttccgcagctcgtg
gtcacgcagatgaagcggtcgctccgcgacggcaaggtgttcgtcgactactcgcagaac
aacgccgcgaagaccaccgtctcgccgtactcggtgcgcgggcgggaccagccgtgggtc
gccgcgccacgcacgtggggggagctcggggaaccgggactcgcacacctcgagctcggc
gaggtgctggagcgtgccgccgacggcgacctgctcgcacccctgctgccgccggacccg
ctgtccacctaccgcgcgaagcgggactcggcgaggacgcccgagccggtcccgttcgcc
gcgcccgtggcggcgccggccggggatcctcggttcgtcatccaggagcaccacgcgcgt
cggctgcactgggacctgcggctggagcacgacggcgtgctggcgtcgtgggcggtgccg
cgcggcgtgccgacgacgacgggacacaaccgcctcgccgtccacaccgaggaccacccg
atggagtacctcacgttccacgggtcgatcccgaagggggagtacggcggcggcgagatg
accgtgtgggacaccgggacgtacacgccggagaagttccgcgacgacgaggtcatcttc
gtgctgcacggccagcgggtgcaggggcggttcgccctcatccgcaccgacccgggtcgg
ggtgggggcaaggagcagtggctgctgcacctcatgaaggaccagtccggcgtggcgacg
tcgccggagaagcgggcgcacgccgtcgtcgacgctcccgacgcggctgccgacgacggc
gctcacatctcgctcagcgacgccgtcgaaccccgccgcatcgctcccgacctgagaccg
atgctcgccaccgcgggccaggtcggcgacggcgactacccggcgcgggagtgggcgttc
gagccgaagtgggacggctaccgggcgctggtccggttctccgcgcgcggcgtggccctg
cagtcgcggtcggggcgggacttcacgcaggagttcgcggagctggccgtcgtgcccgag
gagctcgccgcgcacgccggcgtcctggacgcggagatcgtggcgctcgacgccgccggc
cgcccgagcttccacgccctccaggaacggggcaccggcgcccgccccgcgatgcggctg
ctcgtgttcgacgtgctgcacctcgacggcacctcgctcgtcaacaagaggtacagcgac
cgccgccaggtgctgctcgccctgccgctcccggccgccgacccggaccatctgggccgc
gaggagcgcgacgtcggcgggtggcgccggtcggtcaccatcggcacgtcggtgcgggcg
gcactgcgcgcgagcgcggaggcccgcctcgagggcgtcatcgcgaagcgcctcgacgcg
cgctacctgccgggccgccgcgggcacgcctgggtcaagctcaagcactcgctcgacgcc
gaggtggtgatcggcgggtggcggcccggtcagggcaggcgggccggggggatcggctcg
ctgctgctgggggtgcccgacgacgacggcggcttgcggtacgtgggcaaggtcgggacg
ggtttcacggacgccgcgctggacgcgctcctggcgacgctcgagccgcgggagcggacg
acgtcgccgttcaccaccgaggtgcctcgcgtcgaggcgaaggtcgcgcactgggtgcgg
cccgacgtcgtcggcgaggtgacgttcgactcgtggaccgacgacggcgtgctgcgcgct
gcgaggtggcgcgggctgcggccggacaaggcgccggcggacctggcctga

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