Brachypodium distachyon (stiff brome): 100838222
Help
Entry
100838222 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100838222
03009 Ribosome biogenesis [BR:
bdi03009
]
100838222
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100838222
Spliceosome [BR:
bdi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100838222
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Helicases
100838222
Pre-60S particles
100838222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
100838222
NCBI-ProteinID:
XP_003577369
UniProt:
A0A0Q3EJG4
LinkDB
All DBs
Position
4:complement(14279650..14282987)
Genome browser
AA seq
662 aa
AA seq
DB search
MDVAGAQARTLPLLLRHPDFCSRGSVSFSSSFPRGGARRSWAAAATAEGEGYERVAMDTP
GAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVPSPAVLSRSTHSGNTDSSSLSKGAANSGS
SGVGSFGRLKAQKVQDLARRSLANLKREPTSSRTSTTRRNESSFVDKKVEGESDFGRRKY
GSEYPARRAKPNNNSRDEKTREVRSLDSVLRQYRGDGDSDFRSEEATSGPKVWGKVADAT
SYRREDRKQKVPLDSGFFSRRSFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRS
CIIADQSGSGKTLAYLCPIIQNLRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRS
ISKSGAPFRSMVATGGFRQKTQLESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFD
EVDILFGEEGFEQVLHQLITVAPVTTQYLFVTATLPLDIYNKVVETFPDCEVIMGPSIHR
TSARLEEILVDCSGDDNDEKNPETAFSNKKLALVKIIEESPVRKTIVFCNKIETCRKVEN
VLTRLDRKASQIKVLPFHAALDQEKRIANMKAFLNKQSSDSMFLVCTDRASRGIDFTNVN
HVVLFDYPRDPSEYVRRVGRTARGASGDGKAFVFAVGKQVSLARRVMERNLKGHPLHDVP
CF
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggcgggggctcaggcccggaccctgcccctcctcctgcgccacccggacttc
tgctcccggggctccgtctccttctcgtcctcattcccccgcggcggcgcccgccggagc
tgggcggcggcggccacggcggaaggggaaggctacgagcgggtggccatggacaccccc
ggcgcgtaccggctcgtggaccggagaactgggaagagcgtcatcgtgtggggcggcatc
gacgacgacgacggcggagaagagcccagcgtgccgtccccggctgtcctctccaggagc
acccacagcggcaacaccgacagctcctccctctccaaaggtgcagcaaattcgggtagt
tcaggtgttgggagttttgggagattgaaggcgcagaaagtgcaagatctagctaggaga
tcattagccaacctcaagagagagcctacttctagccgtacaagcaccacccggcgtaat
gaatcatcttttgttgataaaaaagttgaaggtgaaagtgattttggaagaaggaagtat
ggttcagagtacccagcgcgccgtgcaaaaccgaataataactctagggatgagaagacc
agggaagtacgctctctggattctgttctgaggcaatacagaggcgacggtgattcggat
tttcgaagtgaagaggctacttctggccccaaagtttggggtaaagttgccgatgctaca
tcttatagacgagaggatcggaagcaaaaggtccctttggacagtggtttttttagtcgc
agatcttttaaggagattggctgtggtgacgaaattcttggtgcattgagaagctttggg
tttcctcaaccatcacatattcaggctatggcatatggtcctgtcttggaggggaggagt
tgcattattgccgatcaaagtgggtctggcaagacattggcatatctttgccctataatt
caaaatttaaggaaggaagaagcaatgggggtccacaaatcatctcccaggaacccacga
gtcataatattgacacctactgctgaactttcttctcaggtccttcagaattgccgttca
atatcaaaatctggggctcccttcaggtctatggttgcaactggtggatttcggcagaaa
acgcagctagaaagccttgagcaagagctagatgtacttatagcaacacctggtcgtttc
ctgtatctgcttcaggaaggctttgtgcaattaaataacctcagatgtgttgtgtttgat
gaagtggatattttatttggtgaagaaggttttgaacaagtgcttcatcaattgattact
gttgcaccagtgaccacacagtatctttttgtcactgccactcttcctcttgatatatac
aacaaggttgttgaaacatttcctgactgtgaggtaatcatgggacctagtatccatcga
acaagcgcacgtcttgaagagattctcgtggactgcagtggagatgacaacgatgaaaag
aatccagaaacagccttttcgaacaagaaattggcacttgtaaagattattgaggaatcc
ccggttcgtaaaacaattgttttctgcaacaagattgagacatgtagaaaggttgaaaat
gtgctgacacggctggacaggaaagcttcccagatcaaggttctaccattccatgctgca
ctggaccaggagaaacgcattgcaaacatgaaagcattcctgaataagcagtcttccgac
tcgatgttcctggtgtgcactgacagagcttcgcgggggatcgactttacgaacgttaac
cacgtggtgctcttcgactacccccgagatccaagcgagtacgtccgcagggttggcagg
acggcccgaggcgcctcaggtgacggcaaggctttcgtgttcgcggtgggcaagcaggtg
tccctggccaggagggtgatggagagaaacctcaaggggcacccactgcacgatgtcccg
tgcttctga
DBGET
integrated database retrieval system
