Brachypodium distachyon (stiff brome): 100839880
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Entry
100839880 CDS
T01717
Name
(RefSeq) protein transport protein SEC16A homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bdi04131
]
100839880
Membrane trafficking [BR:
bdi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
100839880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec16_C
Sec16
Motif
Other DBs
NCBI-GeneID:
100839880
NCBI-ProteinID:
XP_003561234
UniProt:
I1H207
LinkDB
All DBs
Position
1:50680812..50688290
Genome browser
AA seq
1554 aa
AA seq
DB search
MASDSDDADFFDKLVDDDDDDQVVPPAAAAQAAYAAVADISSLSLADDAVDEPELPAAAT
APADAADPPPALTPPKAGDDVPAVPSDAEVLAALPEVKAAAVAAVPKTEAVATPEGGSPG
SGKAVRTTVKQVQWSVFGADSSAEADPFGDLLADGAGGDSFFGVSGAQVQEPRSSVAAAG
SVGAAPADHGFFSGVGNNAISQPGWGARAGGFLADGAAGDEAAFFGASVVEDQGVQTGSV
VATSGVGAAYHGFFNGVDSSANSSQSYMGASAFESADQNTNVQSEWASGSVNSSEPNYLE
NRYPGWMFDEATQNWYQVPTTSAQGFADYGGAVTAVGSGNVQQLQQQLSGSYMHNSSQAG
LETIAEEGGTTVMTWGQDQSSAVAAEYPPNMLFYAEYPGYYFDTNTQDWYTLESYQQSFA
QVATATAASDAFVGHNVGNAMNSQASNFNQQNQWQQSSYSSHQHTETQITQQANTEPSEP
STNYRTGINTFVPSLEPSMNHSTSVSTFMPSTSQYSSGESHQVSHKGFEPTSYQNVQKGF
EPYKSNQSTFTNHDSGYKVSEPSTGHQGFKPVANNHKSTGFVPSTGHQIAHREFEPSKDN
QAYHVAHEPSVAHGYVNSNGFAEQQTFVPSTTGSMYQTQTHIDPAAHMHLTNNYLISENS
MNFAQQQPVSQQFGYSPHQERSSAGRPPHALFAFGFGGKLVVMKETSSMTTSFDSGNQGN
SRGMVSIHNISEIVADKIDQSSITNGSALGYFHALCRRPIPGPLVGGSPATKDVSKWLDE
IIGSYESSVREFQGGDVQKLLVSLLKISYQHYGKLRSSFGSDPLQEGMDGPDTAVTTLFS
SCNSNSAHIREYGAITHCMKNIPSENQIQATAQNVQSLLVSGRRKDALQYAQEGQLWGPA
LVLALQLGDKFYADTVKKMAYSHFMSGSPLRTLCLLIAGQPADVFHAENPIDANYGTLHR
PQEAAEGTPKGMLDDWQQNLAIITANRTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAE
LNIDAYSETARMCLLGADHLRCPRTFTSPEAIQRTELYEYAKVLGNSQYILLPFQPYKLV
YAYMLAEVGKISDSLRYCQASLKVLKASGRAPELEAWKQLFSSLEERIRTHQQGGYGTNL
APAKLVGKLFTSLDKSLSRMMGTQPTSLPPLAQPMPPLAQGSSTERDLYSAPPATNFVNN
NQSATPMSFSASEQSMSDMTGNSGPDRKGTHNRSVSEPDFNRAPQQGTRSDNPQSTSGSG
NSRFGWLLQKTMGLVSKSPHQAKLGEQNKFYYDEKLKRWVEQGAEVPAAEEPPLPPPPTK
ASFQNGVPDYNLTGPSIGGYTANGFAETKPPNPSELMTGMPPMPPSQNQFSARGRAGVRS
RYVDTFNKGGAATAASYNKPAMPSMKPLPGAGFFVPTPAADEPKQTTESTADVHSATAYQ
DGPSSSPAVERSFASPPPPLVPMQSSIQRHPSMDNILTPSGSGNSSFSKSRAASWSGTYS
DQLSTTAASRSPDGQTMQSPVLMPPGRQPSHSRSHSNSSIQLNGLGEDLQEVEL
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgattccgacgacgccgacttcttcgacaagctagtcgacgacgacgatgac
gaccaagtggtgccccccgctgccgccgcccaagccgcatacgcagcggtggcggacatc
tcgtccctctccctggccgatgacgcggtcgacgagcccgagctgcccgcggcggcgacg
gctccggctgacgctgcggatcctcctccggccctgactcctcccaaggctggggacgat
gtgccggcagtgccctctgacgcggaggttctggccgcgctgccggaggtgaaggctgct
gccgtggcggcggtccctaagacggaggctgtggcgacgccggaaggcgggtcgccaggg
tccgggaaggccgtccgcaccacggtcaagcaggtgcagtggagcgtgtttggcgccgac
agcagcgcagaggcagatccgttcggggacttgttggcggacggggccggtggtgattcc
ttttttggagtcagcggagcccaggtccaggaaccgcggagttcagttgccgctgcgggc
agtgttggagcagctcctgccgaccacggcttctttagcggagtaggtaacaatgccatt
tcacaaccgggttggggagcccgtgccgggggcttcttggcggatggtgctgctggtgac
gaagctgcgttctttggagctagtgtcgtggaggaccagggtgtgcagacgggttcggtt
gtggcgacaagcggtgttggagcggcatatcatggcttcttcaatggtgtggatagcagc
gccaattcttcacagtcgtatatgggtgctagcgcttttgagtctgcggatcagaacacc
aatgtgcagtcggagtgggctagtgggtctgtgaactcctcggaacccaactatctggag
aatcgctaccctggctggatgttcgacgaggcaacacagaactggtatcaggtgcctact
accagtgctcaaggttttgctgattatggtggtgctgtaacggctgttgggagtggcaat
gttcagcagctgcagcagcagcttagtggttcgtacatgcataactcttcacaggcaggg
ctagagaccattgcagaggagggcggtaccactgtcatgacctggggtcaggatcagagc
agtgcagttgctgcagagtacccgccaaacatgctattttacgcagagtaccctggatac
tactttgacaccaacacccaggactggtacacgctcgagtcatatcagcaaagttttgct
caggttgcaactgccacagcggcttcagatgcatttgtagggcacaatgtaggtaatgcc
atgaattctcaggcaagtaacttcaatcagcaaaaccaatggcagcagtcttcctacagt
tcccatcagcacacggagactcagattactcagcaggctaatactgagccttcggaaccc
tctacaaattaccggactggtatcaacacattcgtgccttcgttggaaccctctatgaat
catagtactagcgttagcacattcatgccttctacaagtcaatacagtagtggtgagagc
caccaagttagtcacaagggcttcgaacctactagctatcagaacgttcagaagggtttt
gaaccgtataaaagcaaccaaagtacctttactaaccatgacagtgggtacaaggtatct
gaaccttcaacaggtcatcaggggttcaaacctgttgcaaacaaccataaaagcacagga
tttgtaccgtctacaggtcaccagattgcccacagggaatttgaaccttctaaagataat
caagcttatcatgtggcgcacgaaccttcagtagcccatggttatgtcaattcaaatggc
tttgctgagcaacaaacatttgttccttcaacaacaggaagcatgtaccagacacaaaca
cacatcgatcctgcagcacacatgcatttaacaaacaactatttgatcagcgagaactcc
atgaactttgctcagcagcaaccagtatctcaacaatttggttactccccccaccaagag
aggtcatcagctggacgcccaccacatgctctgtttgcgtttggatttggcgggaagctt
gtagttatgaaagagaccagctcaatgactacaagctttgacagcggtaatcagggcaat
tctcgtggcatggtgtcaattcataatatatcagagattgttgctgataaaattgatcaa
tcaagcatcaccaatggcagcgcacttggctacttccatgctttgtgtcgtcgacctatt
cctggcccccttgttggcggaagtcctgcaacaaaggatgtgagtaaatggcttgatgag
attattggaagctatgagtcttctgtaagggaattccaaggaggggatgttcagaagctg
cttgtttcattgctgaaaatatcatatcaacactatggaaaactgcgttcatcatttggc
tcagacccattgcaggagggtatggatggcccagacacagcagtaacaacactattctca
tcatgcaatagtaatagtgcgcatataagagaatatggagccattacccattgcatgaaa
aatattccctcagaaaaccagatacaggctactgctcaaaatgttcaaagtcttctagtt
tctggtagaaggaaagacgcacttcagtatgcgcaggaaggtcagctttggggacctgca
ctagtccttgctttacaactcggtgataagttttatgctgatactgtgaagaaaatggct
tacagccatttcatgtctggatcacctttgaggacattgtgtcttcttattgctggacaa
cctgcagatgtttttcatgctgaaaaccctatcgatgccaattatggtactttgcatagg
ccacaagaggctgcagagggtactccgaagggcatgctggatgactggcaacagaatttg
gctattataactgcaaacaggacgaaaggcgatgaccttgtaattactcaccttggggat
tgcctttggaaagagaaaaatgaggttgcagctgctcattcatgctatttagttgccgag
ctaaatattgatgcgtattctgaaactgcaagaatgtgtctccttggtgcagaccacttg
agatgtcctcgcacatttaccagtcctgaagctatccagagaacagagttgtatgaatat
gcgaaagttctcggtaattctcagtatatcctcctgccatttcaaccatataagctggta
tatgcatatatgctcgctgaggttgggaagatctctgattcactaaggtactgccaagca
tctctgaaggtgttgaaagcctctggccgtgcgcctgaactagaagcatggaagcaattg
ttttcatccctggaggagaggatacgcacccaccagcagggtggatatggcacaaatctt
gctccggcaaagcttgttggaaagcttttcacatcacttgataaatctttgtcccgcatg
atgggtacacaacctacatcattgccgccattggcgcagccaatgccgccattggcacag
ggatcttctactgaaagagatttatattctgctcctccagctacgaattttgtaaataac
aatcagtcagcaacgcctatgtcattttctgcgtcagagcagtctatgagtgacatgaca
ggaaatagtggtcctgacaggaaaggcacacacaacagaagtgtctctgagccagacttc
aacagagcccctcaacagggcacaagatcagataatccacaaagcacatcaggttcaggc
aattcacgttttggatggttactgcagaagacaatgggattggtctcaaaatctcctcac
caggcaaagttgggggaacagaacaagttctattatgatgagaagctgaagaggtgggtg
gaacaaggtgctgaggtcccggctgctgaggagccgcctcttcccccacctccgacaaaa
gcctcattccagaacggtgttccagattacaacttgactggccccagcattggaggctat
actgctaatggatttgcagaaacgaagcccccaaatccttctgagcttatgacagggatg
ccaccgatgccacctagccagaaccagttctcagcacgtgggagggcgggtgttagatca
agatatgttgacacatttaacaagggtggagcagcaacagcagcatcatataacaaaccg
gccatgccatctatgaaaccgcttcctggtgctggtttctttgtgccaactcctgctgcc
gatgaaccaaagcagacgaccgagtcaacagctgatgtgcacagcgcaactgcatatcag
gatggcccatcttcctcccctgcggtggagcgatccttcgcttccccaccaccgccttta
gtgccgatgcaatcaagcattcagcggcatccaagtatggacaatatcttgacaccctct
ggcagcggtaatagctcgttctcgaagtcacgagcagcctcatggagtggaacatactca
gaccagttgagcaccaccgccgcttcaagatcaccagatggacagaccatgcagtcgcca
gtgttgatgcctcctggaaggcaaccttctcacagccgttcccacagcaactcgtccatc
cagttgaatggtttgggagaggatcttcaggaggtagagctctga
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integrated database retrieval system
