Brachypodium distachyon (stiff brome): 100844508
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Entry
100844508 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
3.6.4.13
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100844508
03041 Spliceosome [BR:
bdi03041
]
100844508
03036 Chromosome and associated proteins [BR:
bdi03036
]
100844508
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100844508
mRNA cycle factors
Common to processing body (P body) and stress granule
100844508
Spliceosome [BR:
bdi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100844508
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100844508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
100844508
NCBI-ProteinID:
XP_003577389
UniProt:
I1IKL5
LinkDB
All DBs
Position
4:complement(14956352..14961740)
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AA seq
609 aa
AA seq
DB search
MAAPSMTSWADVADAEPAPAPAPASDGPARSDRSSYVPPHLRNRSSAAPPASSAPPPRAA
PGLLGRPAPGVPGRFVGGGGGGAAPPPRRWDREPNPFGNDEPVPAAEPEGFDEHQNTGIN
FDAYEDIPVETSGREVPPAVSTFAEIDLGAALNDNIRRCKYVRPTPVQRHAIPISLAGRD
LMACAQTGSGKTAAFCFPIISGIMRGPPVQRPQRGGSRTACPLALILSPTRELSMQIHEE
ARKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLA
LDEADRMLDMGFEPQVRRIVEQMDMPPRGVRQTLLFSATFPGEIQRMASDFLENYIFLAV
GRVGSSTELIAQRVEFVHEADKRSHLMDLLHAQRDSADHGKQALTLVFVETKRGADSLEN
WLCTNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLDIPHVAHVVNFDLP
NDIDDYVHRIGRTGRAGKSGLATAFFSDNNASMAKSLADLMQESNQEVPAWLTRYAARPS
YGGGGGGRNRRGGGGGSRFGGRDFRRESSSFGKGGDYGGGSNGGAGSYGGSSSYGGGGYG
GAGAPSAWD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccctccatgacctcctgggccgacgtcgccgacgccgagcccgcccccgct
ccggccccagcatccgacggccccgcgcgctccgaccgctcctcctacgtccctccccac
ctccgcaaccgctcctccgccgcgcctcccgcgtcctccgctcctcccccacgcgctgcc
cccggcctcctcggccgccccgcacccggcgtccccgggaggttcgtgggtggcggcggg
ggcggggcggccccgccgccgcgcaggtgggaccgtgagccgaacccgttcgggaacgac
gagccggtgccggccgccgagcccgaggggttcgacgagcaccagaacaccgggatcaac
ttcgacgcgtacgaggacatccccgtcgagaccagcggccgggaggtgccccccgccgtc
agcacgttcgcggagatcgacctcggcgccgcgctcaacgacaacatccgccgctgcaag
tacgtgcggcccacccccgtgcagcggcacgccatcccgatctcgctggccggccgcgac
ctcatggcctgcgcgcagaccgggtccgggaagacggccgccttctgcttccccatcatc
agcggcatcatgcgcggcccgcccgtgcagcgcccgcagcggggcggcagcaggactgcc
tgcccgctcgcgctcatcctctcgcccaccagagagctgtccatgcagattcatgaagag
gcgaggaaattttcgtatcagactggtgtgagggtagtcgttgcatatggtggggcgcct
attactcagcagctgagagatctcgagaggggtgttgacattcttgtggctactcctggt
cgtttggttgatttattggaaagggcaagagtatctttacaatcaattagataccttgcc
cttgacgaggccgatagaatgctggacatgggttttgaaccacaagttaggagaattgtt
gaacaaatggacatgcctccacgaggtgtcaggcagacattgttatttagcgctacattc
ccaggagaaattcagagaatggcatctgactttctggagaactacatattcctggctgtt
ggaagagtggggtcaagtactgagttaattgcccagagagttgagtttgtgcatgaggca
gataaaagaagtcacctgatggatctgctccatgcgcaaagagacagtgcagatcatgga
aagcaagctctcacacttgtctttgtggaaaccaaaaggggtgctgactcgttggagaac
tggttgtgtacgaatgggtttccagcgacttctattcatggtgatagaaaccagcaggaa
agagaatatgctttgagatccttcaagagtggccaaactcctattttagtcgcaactgac
gtggcggccaggggcctcgacattccccatgttgctcatgttgtgaactttgatctcccc
aatgacattgatgattacgtacacagaattggaaggacagggagggcaggaaaaagcggt
cttgcaacagctttcttcagtgacaataatgcctcgatggcaaagtctctagctgaccta
atgcaagaatctaatcaggaggtacctgcgtggctcactcgctatgcagctcgcccatcc
tatggtggtggtggtggaggaaggaacagacgtggtggaggaggtgggagccgctttggt
ggccgtgacttccgcagggaatcttcttcctttggcaagggcggtgactatggtggaggc
agcaatggtggtgctggcagttacggtggttcctcttcatatgggggtggtggctatggt
ggtgctggggctcccagtgcttgggattaa
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