Brachypodium distachyon (stiff brome): 104583264
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Entry
104583264 CDS
T01717
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
bdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104583264
03420 Nucleotide excision repair
104583264
03430 Mismatch repair
104583264
03440 Homologous recombination
104583264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bdi03000
]
104583264
03032 DNA replication proteins [BR:
bdi03032
]
104583264
03400 DNA repair and recombination proteins [BR:
bdi03400
]
104583264
Transcription factors [BR:
bdi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104583264
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104583264
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104583264
MMR (mismatch excision repair)
104583264
DSBR (double strand breaks repair)
HR (homologous recombination)
104583264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
DUF223
RMI1_C
Motif
Other DBs
NCBI-GeneID:
104583264
NCBI-ProteinID:
XP_024314250
LinkDB
All DBs
Position
2:38858806..38864115
Genome browser
AA seq
543 aa
AA seq
DB search
MISRAEQGVTNIAYSPRQGLLGSSTAARAEHAVKNLPFSGFYGPMQSQNAIYAKMQQLSL
NSHKGQRLAVPWAFGFPGNTYGYRVHPLYQQTPPMYMNGGPVTNNEGPAIPIANLNPYLA
RWTIKGRVTGKTEVRHFGEGKVFSFDLLDAQGDEIRATCFNSLVDQYYDKIVVGNVYLIS
RASVKPVLRKKANPLNHEHELILDASTSVESCSGDDGSIPLQRYNFRQISEIENLDCSST
VDFLGVVTSVSPSVTIARKNGPEAHKRTIQLKDMSGRSVPITLWGNFCDVEGQLLHSQWE
SGLNPILAVKGGRISHFNGPSVGTTSSSQLKINPDLPAAEKLRRWYAAEQEDDVYQTIVQ
INDEDFGTLSQPDLATVVATISFVCSGACCYPACDLMFNGEQCKKRVTADGDWWWCNRCL
RRSKTCEYRYHIVCQIHDHTGSTYATVSQKAARDIIGRKAQEFYTIKDAVQNGQEFEKIM
QGILGCEYLLKMSIKKVAENGIVVKRVIVEAERLDLSNSRRVLGAIDKLSKDNSSSSVGD
IEI
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatctcaagggctgagcaaggtgttaccaatatagcatattctcctcgtcaaggcttg
ttgggatcttctactgctgcaagggcagagcatgctgtgaagaatctgccgttctctgga
ttttatggtccaatgcaatcacaaaacgcaatctatgccaagatgcagcagctttcactg
aactctcataaaggccaaaggcttgcagttccttgggcctttggctttcctggtaatact
tatgggtaccgtgtgcatcctttgtatcaacaaacacctccaatgtatatgaatggaggc
cctgttactaacaatgaaggtcctgccatcccaattgctaatttaaacccatacctagcc
agatggacaatcaaaggtagggttactggaaagactgaggtccggcattttggcgaaggg
aaagtcttctccttcgatctacttgatgcccagggtgatgaaattcgtgcaacatgtttc
aattcactggttgaccaatattatgacaaaattgtggttggaaatgtgtacttgatatct
agagcatcggtgaaacctgtactccgaaagaaagccaaccctttaaaccatgagcatgaa
ctgattctggatgcttcaacatctgtagaaagttgttctggtgatgatggcagcatccct
ttgcagcgatacaatttccgacagatcagtgaaatagaaaatctggactgttcttccacg
gtagattttcttggggttgttacatcagtgagcccttctgttacaatagcgcggaaaaat
ggcccagaagcccataaaaggaccattcagctgaaggacatgtctggtcggagcgtgcca
ataaccctgtggggaaacttctgtgatgttgaaggacagctgctgcattcacagtgggag
tctggtttgaaccctatacttgctgtgaagggtggccgtatcagtcatttcaatggacca
tctgtgggcacaactagctcaagccagttgaaaataaaccctgacttacccgcggcagaa
aagctgaggcgatggtacgcagccgagcaggaggacgatgtttaccaaaccattgtgcag
atcaatgatgaggactttgggacgttaagtcagcctgatttggccaccgttgtggctaca
atttcatttgtatgctctggtgcctgttgctacccagcctgtgacttgatgtttaatggc
gagcaatgcaagaaaagggtcacagctgatggtgattggtggtggtgcaacagatgtctt
aggaggtccaaaacttgtgagtacaggtatcatatcgtgtgtcagattcatgatcatact
ggttctacctatgctactgtctctcaaaaggcggccagggacataattggccgcaaggca
caagagttttacacaataaaagatgctgtgcaaaatggccaagaatttgagaaaatcatg
caggggattcttgggtgtgaatatctgctcaagatgagcattaagaaggtcgccgagaac
ggtatcgtcgtgaagcgtgtcatagtagaggctgaaaggctggacttgtcaaacagtcgc
cgtgtcctgggagcaatcgacaaactgtcgaaggataactcatcttcatctgttggtgac
attgagatatga
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integrated database retrieval system
