Phocaeicola dorei HS1_L_1_B_010: EL88_09865
Help
Entry
EL88_09865 CDS
T03262
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bdo
Phocaeicola dorei HS1_L_1_B_010
Pathway
bdo03030
DNA replication
bdo03410
Base excision repair
bdo03420
Nucleotide excision repair
bdo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EL88_09865
03410 Base excision repair
EL88_09865
03420 Nucleotide excision repair
EL88_09865
03430 Mismatch repair
EL88_09865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdo03032
]
EL88_09865
03400 DNA repair and recombination proteins [BR:
bdo03400
]
EL88_09865
Enzymes [BR:
bdo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EL88_09865
DNA replication proteins [BR:
bdo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EL88_09865
DNA repair and recombination proteins [BR:
bdo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EL88_09865
NER (nucleotide excision repair)
GGR (global genome repair) factors
EL88_09865
MMR (mismatch excision repair)
DNA ligase
EL88_09865
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EL88_09865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
PADR1_Zn_ribbon
EAD10
zinc-ribbons_6
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
AII63459
LinkDB
All DBs
Position
complement(2234598..2236595)
Genome browser
AA seq
665 aa
AA seq
DB search
MTEIERIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMR
VGSDINKNFMQVVHKYPMLSLTNTYSETEVTEFYDRVKKSLNEDFEICCEMKYDGTSISL
TYENGKLLRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPEAFEIRGEILMPWVVFEE
LNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLPCDGHYENLKE
AEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQRNLGFTAK
SPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPVQLSGTVVKRASLHNADIIE
GLDLHIGDMVYVEKGGEIIPKIVGVDKNARIMIGDKVKFITYCPECGSKLVRYEGEAAYY
CTNDAACPPQIKGKIEHFISRRAMDIDGLGPETVDQFYQEGLIRDVADLYTLKTSDIINL
ERMGEKSAENIIKGIEQSKEVPFERVLFALGIRFVGETVAKKVAKSFKSMDALADASLDD
LIHVDEIGEKIAQSILLYFANPKNRDIIERLRVAGVRLEADEEDTSGHTDKLAGKSIVIS
GVFAHHSRDEYKELIEKHGGKNVGSISSKTSFVLAGDNMGPSKLEQAQKLGVTIVSEEEF
LQMIE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaatagaaagaatagaccaattgcgcgaggagcttcatcgacataactataat
tattatgtattgaatgcgcctgagattacagaccaggagtttgacaagctgatgcgtgaa
cttcaggatctggaagaaaaacatccggaacatagagatgagaactcgcccagtatgcgt
gtgggaagtgatataaacaaaaacttcatgcaggtggtacataaatatcccatgctttca
ttgactaacacctattcggaaacggaagtaaccgagttttatgacagggtaaagaagtcc
ttgaacgaagattttgagatttgttgtgaaatgaaatacgatggtacttctatttcgctg
acttacgagaacgggaaattgttgcgtgctgtgacgcgtggtgatggcgtgcaaggagat
gatgtgacaggcaatgtgaagaccatccgcagtatccctttggtgttgcatggaaagggg
tatcctgaagcatttgaaattcgtggggagattttgatgccttgggtggtgtttgaggaa
ttgaacaaagaacgagaagcccgcgaagaaccgttgttcgctaatccccgcaacgcagct
tcgggaacattgaagttgcagaattctgccattgtggcatcccgcaagctggatgcatac
ctttattatttgcttggagataatttgccgtgcgacggtcattatgaaaatttgaaagaa
gcggagaaatggggatttaaaatttctgatcttactcgcaaatgcaaaacattgcaggaa
gtatttgatttcatcaaatactgggatgtggagcgtaagaatctgcctgtagctacggac
ggaatagtactgaaagtgaattctttgcgacagcagcgtaatttgggttttacggcaaaa
tcaccccgatgggccattgcatacaagtttcaggccgaacaggcacttacccgtttgaac
aaggtgacctatcaagtgggaagaacaggtgctgtgactccggtggccaatctggatccc
gtacagctatccggaaccgtggtaaagcgtgcttcgctccataatgcagacatcatagaa
gggctggatttgcatatcggcgatatggtttatgtagaaaaagggggcgagattattcca
aaaattgtaggtgtggacaagaacgcccgtattatgataggtgataaagtaaagtttatt
acttattgccccgagtgtggcagtaaattggtgcgctatgaaggtgaagctgcttattat
tgtaccaatgatgccgcttgccccccacagatcaagggaaaaatagaacattttatcagc
cgtagggctatggatattgatggactcggtccggaaacggtagatcagttttaccaggaa
ggattgatacgtgatgttgccgatctgtatactttaaaaacatcggatatcatcaacctg
gaacgtatgggagaaaaatccgctgagaatataataaaaggtatagagcagtccaaagaa
gtgccgtttgaaagggtgctctttgcattgggtatccgttttgtgggtgaaactgtggcg
aagaaggtggcgaaatcctttaagtcgatggatgctttggcagacgcgagtttagatgat
ttgattcatgtcgatgaaatcggagaaaaaatagcacagagtatcttgttgtactttgct
aatccgaagaatcgtgacattatagagcgtcttcgtgtggcgggtgtgagattggaagct
gatgaggaggatacttcgggacacactgacaaattggcagggaaatctattgtgattagt
ggggttttcgcccatcattcgcgtgacgaatataaggagttaattgaaaagcatggtggt
aagaatgtgggaagtatttcgtccaagaccagctttgttttggcgggtgacaatatggga
cccagtaaactggagcaagcgcagaaactgggtgtgaccattgtgagcgaagaggagttt
ctgcaaatgatagagtga
DBGET
integrated database retrieval system
