Brachybacterium faecium: Bfae_14060
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Entry
Bfae_14060 CDS
T00965
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfa
Brachybacterium faecium
Pathway
bfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bfae_14060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfa03019
]
Bfae_14060
03009 Ribosome biogenesis [BR:
bfa03009
]
Bfae_14060
Enzymes [BR:
bfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bfae_14060
Messenger RNA biogenesis [BR:
bfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bfae_14060
Ribosome biogenesis [BR:
bfa03009
]
Prokaryotic type
rRNA helicases
Bfae_14060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACU85237
UniProt:
C7MCD0
LinkDB
All DBs
Position
complement(1583434..1585443)
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AA seq
669 aa
AA seq
DB search
MTDASPATDPSTGSTPSSAPAVHPETAPSDEGASSDTGTATDTAPATATAAAAGADTATD
AAAIPEPAAAEPAPAAEPAAPAGPSFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLE
GRDVIGVAQTGTGKTAAFGLPLLAAIDPSLREVQALVLAPTRELAMQVADAIASFATSIG
GLDVVALYGGSPYGPQERALARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEML
RMGFAEDVEEILSHSPDTRQVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQ
TYAVVPFRHRTGALARVLATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQK
EREKIVERLRDGSLQVLVATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRS
GEALTFIGPHERRALKNIERATKQTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLEL
YRELIGQFVAEHDIDPLELAAALGAMSVGDEGPGTATEEEEFTGAKLGEDRSPRGDRDRG
PREAAATERGYTSYKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRG
SLSPEQMERISRAKVGGRELRIGPDHGPRGGKGPRRDNDRPFRRDDRSRRDDRGGRFDSA
RRGPRRSEG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgcctcccctgccaccgacccctccaccgggtccaccccctcctccgcgcct
gcggtccatcccgagacggcaccgtccgacgagggcgcctcgtccgacacaggcaccgcg
accgacaccgctcccgcgaccgccacagccgctgcggccggggcggacaccgcgacggat
gccgctgcgatccccgagcccgctgcggcagagcccgcgcccgctgcggagcccgcggct
ccggccggccccagcttcgatgacatcgcgctgccggcaccgctgcgccgcgcggtcgac
gagctcgggttcaccaccccctcggcgatccaggcccaggcgatcccgccgctgctcgag
ggccgcgacgtgatcggcgtcgcgcagaccggcaccggcaagaccgccgccttcggcctg
ccgctgctggccgcgatcgacccctccctccgcgaggtgcaggctctggtcctcgccccc
acgcgcgagctggcgatgcaggtggccgacgcgatcgcctccttcgccacctcgatcggc
ggtctcgacgtggtcgcgctgtacggcggctccccctacggcccgcaggagcgcgcgctc
gctcgcggcgcccaggtcgtcgtcggcaccccgggccgagtgatggaccacatgcgccgc
acgaacctgcgcctggacaccatccgcgtcgcggtcctcgacgaggccgacgagatgctg
cggatgggcttcgcggaggacgtcgaggagatcctctcccactcccccgacacccgccag
gtcgccctgttctcggcgacgatgcccgccgccatccagcgggtcgcccagacccacatg
caggatcccgtgcgcgtgagcgtgagccctcagtcctccacggtcaagagcgtccaccag
acctacgccgtggtgcccttccggcaccgcaccggggccctggcccgcgtgctcgccacc
tccgatgcggaggcggcgatcgtgttcgtgcgcacccgcgcggccgccgaggaggtcggc
accgcactggtgggccgaggcctgatcgccgcgtcgatcagcggcgacgtgccccagaag
gagcgcgagaagatcgtcgagcgtctccgcgacggctcgctgcaggtgctcgtcgccacc
gacgtcgccgcccgcggcctcgacgtggagcgcatcggcctggtcgtcaacttcgatgtg
ccgaaggaggcggagtcctacgtccaccgcatcggccgcaccggccgcgccggacgctcc
ggggaggcgctgaccttcatcggcccgcacgagcgccgcgccctgaagaacatcgagcgc
gccaccaagcagaccctcgccgaggcggtcatcccctccccgcgcgacgtctccaagcat
cgcctggccgctcagcttacccaggtccccgcccgtgtcgagcgcggtcgtctcgagctg
taccgcgagctgatcggacagttcgtggccgagcacgacatcgatccgctcgagctcgcg
gccgccctgggcgcgatgtccgtgggtgatgagggccccggaaccgcgaccgaggaggag
gagttcaccggcgcgaagctgggcgaggaccgctccccgcgcggcgatcgcgatcgcggc
ccgcgcgaggctgccgcgacggagcgcggctacacctcgtacaaggtgggtgtgggccac
acgcacggtgcgcggccgccgggcatcgtcggcgccatcaccggcgagggcggcctgcac
ggcaaggacatcgggaagatccagatcttcccccacttcgccctggtgcagatccgcggc
tccctcagcccggagcagatggagcgcatcagccgcgcgaaggtcggcgggcgcgagctg
cgcatcggcccggaccacgggccgcgcggcggcaaggggccgcgtcgtgacaacgaccgc
cccttccggcgcgacgaccgctcgcgccgcgacgatcgcggtggccgcttcgactccgcg
cgccgaggcccccgccgctccgagggctga
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