Brachybacterium faecium: Bfae_18280
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Entry
Bfae_18280 CDS
T00965
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bfa
Brachybacterium faecium
Pathway
bfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bfae_18280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfa03019
]
Bfae_18280
03009 Ribosome biogenesis [BR:
bfa03009
]
Bfae_18280
Enzymes [BR:
bfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Bfae_18280
Messenger RNA biogenesis [BR:
bfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bfae_18280
Ribosome biogenesis [BR:
bfa03009
]
Prokaryotic type
rRNA processing factors
Bfae_18280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
ACU85647
UniProt:
C7MDJ0
LinkDB
All DBs
Position
complement(2046163..2049021)
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AA seq
952 aa
AA seq
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MADSTHEPENDTSETQNPPPARRRRRAGAPAGAPAFTPPTVPEPESTAPRTVVAAQEDVP
AEPAPTTPTRRRRRAGAPAGAPTAPAAEVGTARSETPERAAPVDEPAAEPAPETTEPESA
ETASTETETVAETSEAETETESADGEDNPVVDDLRALASARGAAPEDPAEDDRARRREQV
QMDFASLLFQAPTPQPRTTVGPHDAPVGSADLAFAPAAEDDDSEQADDAEDTGSAERSAH
SEGMDEEHSPRSRRSRSRSRRSSQREGQDDSRSTEDSEEETETESSSQDEGEDRSADGST
SSRRRRRRGGRGRRGRGRGEDDAGDNGEDESSEDAGQDDSDGENGSQRSEAGDSGSGSSS
SRRRRRRRRSGSNGDDASSPDDPPNTVVKVREARDEVKAVKGSTRLEAKRQRRREGRDAG
RKRSVITEAEFLARRESVKRSMVVRERPGRTQIAVLEDDVLVEHYVAQKSQTSMVGNVYM
GKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAVGLEGQPRRIELALKSGDPVLVQVTK
DPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLPDTERARLKKIMRQIIPEDAGVIV
RTAAEGASEEELTHDVERLRAQWEKITKAQKSRSAPVALSQEPDIAIKVVRDVFNEDFTS
LIVEGDKVHDEVHSYVSDVAPDLLDRVTRHVPTSPGKDVFAKHRIDEQLLKAMDRKVYLP
SGGSLVIDRTEAMTVVDVNTGKFTGSGGSLEETVTKNNLEAAEEIVRQLRLRDIGGIIVI
DFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVETFSHSCE
HCNGRGLLVDMDGEHQHGGSGGGNGGDESAKSSRRRGRRSRSGAKDDSENGDNGGEDAQN
DVHRLADDEDSRALARATIASIAAASGSTTPPEAEADSAAAETPEQDTPDQG
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcacccacgaacccgagaacgacacgtcggagacgcagaacccgcccccc
gcgcgccgccgccggcgcgccggcgcccctgccggagcccccgccttcaccccgccgacg
gtcccggagccggagagcaccgccccccgcaccgtggtcgccgcgcaggaggacgtcccc
gccgagcccgcgcccaccacgcccacgcgtcgccgccgccgcgccggcgcacccgcggga
gcgccgaccgcccccgccgccgaggtcgggaccgcccggagcgagacgcccgagcgtgca
gcgccggtggacgagcccgctgcggagccggcgcccgagaccacggagcccgagagcgcc
gagaccgcgagcaccgagaccgagacggtcgcggagacctccgaggccgagaccgagacg
gagagcgccgacggcgaggacaaccccgtcgtcgacgatctgcgtgccctggcctccgcc
cgcggcgccgcgccggaggatcccgccgaggacgaccgcgcccgccgccgcgagcaggtc
cagatggacttcgcctcgctcctgttccaggccccgaccccgcagccgcgcaccaccgtc
ggcccgcacgatgctcccgtcggcagcgccgacctcgccttcgcccccgccgcggaggat
gacgactccgagcaggccgacgacgccgaggacaccggatccgccgagcgctccgcccac
agcgagggcatggacgaggagcacagcccccgctcccgccgcagccgcagccgctcgcgc
cgctcctcgcagcgcgagggccaggacgactcgcggagcaccgaggactccgaggaggag
accgagacggagagctcctcgcaggacgagggcgaggaccgctccgcggacggctccacc
agctcgcgccgtcggcgccgtcgcggaggacgcggccgtcgcggccgcggccgcggcgag
gacgacgccggcgacaacggcgaggacgagagctccgaggatgccgggcaggacgactcc
gacggcgagaacggctcccagcgctccgaggcgggagactcgggctccggctcctcgagc
tcgcgccgccgtcgtcgtcgccgccgctccggcagcaacggcgatgacgcgagctcgccc
gacgatccgccgaacaccgtggtcaaggtccgcgaagcgcgcgacgaggtcaaggccgtc
aagggctccacccgcctcgaggccaagcgccagcgccgccgcgagggccgcgacgccggc
cgcaagcgcagcgtcatcaccgaggcggagttcctcgcccgccgcgagtccgtcaagcgc
tcgatggtggtgcgcgagcgccccggccgcacccagatcgcggtgctcgaggacgacgtg
ctcgtcgagcactacgtcgcccagaagtcgcagacctcgatggtcggcaatgtctacatg
ggcaaggtccagaacgtgctgccctccatggaggcggcattcgtcgacatcggcaagggc
cgcaacgccgtgctctacgccggcgaggtcaactgggacgccgtgggcctggagggccag
ccgcgccgcatcgagctcgcgctcaagagcggcgacccggtgctggtgcaggtcaccaag
gacccgatcggccacaagggcgcccgcctgaccagccagatctccctgcccggccggtac
gtggtgttcgtgcccggagggtcgatgaccggcatctcccgcaagctgcccgacaccgag
cgggcgcgcctgaagaagatcatgcgccagatcatccccgaggacgccggcgtcatcgtg
cgcaccgccgccgagggcgcgagcgaggaggagctgacccacgacgtcgagcgcctccgc
gcccagtgggagaagatcaccaaggcgcagaagagccgctccgccccggtcgcgctctcc
caggagccggacatcgccatcaaggtggtgcgcgacgtcttcaacgaggacttcacctcc
ctgatcgtcgagggcgacaaggtccacgacgaggtccactcctacgtcagcgacgtggca
ccggacctcctcgaccgcgtcacccggcacgtccccaccagccccggcaaggacgtcttc
gccaagcaccgcatcgacgagcagctgctgaaggccatggaccgcaaggtgtacctgccc
tccggcgggtccctcgtcatcgaccgcaccgaggcgatgaccgtggtcgacgtgaacacc
ggcaagttcaccggctccggcggctccctcgaggagaccgtcaccaagaacaacctcgag
gccgccgaggagatcgttcgccagctccggctgcgcgacatcggcgggatcatcgtcatc
gacttcatcgacatggtcctcgagtccaaccgcgacctcgtgctgcgccgcctcgtggag
tgcctgggacgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctgggcctggtg
cagatgacccgcaagcgcgtgggccaggggctggtcgagacgttctcccactcctgcgag
cactgcaacggccgcggcctgctggtcgacatggacggcgagcaccagcacggcggcagc
ggcggcgggaacggcggggacgagtccgccaagtcctcgcggcgccgcggccggcgctcg
cgcagcggggcgaaggacgactccgagaacggcgacaacggcggcgaggacgcccagaac
gacgtgcaccgcctcgccgacgacgaggacagccgcgccctggcgcgggcgacgatcgcc
tcgatcgccgccgcctccggaagcacgacgccgcccgaggcggaggccgacagcgcggcc
gcggagaccccggagcaggacacccccgaccaggggtga
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