Bacteroides fragilis BOB25: VU15_20040
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Entry
VU15_20040 CDS
T03897
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VU15_20040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfb03019
]
VU15_20040
03016 Transfer RNA biogenesis [BR:
bfb03016
]
VU15_20040
Enzymes [BR:
bfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VU15_20040
Messenger RNA biogenesis [BR:
bfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VU15_20040
Transfer RNA biogenesis [BR:
bfb03016
]
Prokaryotic type
tRNA degradation factors
VU15_20040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AKA53746
UniProt:
A0A0K6C038
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All DBs
Position
4843948..4846074
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AA seq
708 aa
AA seq
DB search
MINPIVKTIELGDGRTITLETGKLAKQADGSVMLRMGNTMLLATVCAAKDAVPGTDFMPL
QVEYKEKFAAFGRFPGGFTKREGRASDYEILTCRLVDRALRPLFPDNYHAEVYVNIILFS
ADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTFDQLEQADMDIMV
AATYENIMMVEGEMSEVSEAELLEAMKVAHEAIKVHCKAQMELTEMVGKTVKREYCHEEN
DEELRKAVHDACYDKSYAIAASGNRNKHERQDAFDAIRDEFKAQFSEEELEEKGALIDRY
YHDVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPGPHGSAIFTRGETQSLTSVTL
GTKLDEKIIDDVLAHGKERFLLHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRMIP
EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKIKKPVSGIAMGLIKNAGEEKYA
VLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEGRMHILGK
IEETISEPRTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEIDNVG
RIEISGTNKKSIDDAIRLIKGIVAVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISE
IDWKRLETVEEAGIKEGDEIEVKLIDIDPKTGKFKLSRKVLLPRPEKK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgattaacccaattgttaagacgatcgagttgggagatggcagaaccatcacactcgaa
acgggaaagctggcaaaacaggcagatggttctgtgatgcttcgcatgggaaacaccatg
ttgttagctactgtttgtgccgctaaagatgcagttcccggaacagatttcatgccgctt
caggtagagtataaagaaaaattcgcagcattcggccgctttcctggtggttttacaaaa
agagaaggaagagcatctgattatgagatccttacttgccgtttagtagaccgtgctctc
cgtcctttattccccgataactatcacgcagaagtttacgtaaacatcatccttttctca
gcagacggtgtagatatgcctgatgcattggccggattggctgcttccgcagcactggct
gtttcagatattcctttcaacggaccaatttcagaagtacgtgttgcgcgtatcgatggt
aaattcgttatcaacccgactttcgatcagcttgaacaagctgatatggatatcatggtt
gccgctacttatgaaaacatcatgatggtagaaggtgaaatgagcgaagtgtcggaagcc
gaactactggaagcaatgaaagtagctcacgaagccatcaaagtacattgcaaagcacag
atggaactgactgaaatggttggtaagactgttaaacgcgaatattgtcacgaagaaaac
gacgaagaactccgtaaagccgttcatgatgcctgctatgataaatcatatgctatcgca
gcttccggcaacagaaacaaacatgaacgccaggatgctttcgatgcaatccgcgacgaa
ttcaaagcacaattctcggaagaagaactggaagaaaaaggcgctctgatcgatcgttac
tatcatgacgtagagaaagaagcgatgcgccgttgtattcttgatgaaggaaagcgtctg
gacggacgtaaaacaactgaaatccgcccgatttggtgcgaagtaggttacctgcccgga
cctcacggatcggctatctttactcgtggtgaaactcaatcattgacttcagtgactctg
ggtactaaactggatgagaaaatcatcgacgatgttctcgctcatggaaaagaacgcttc
ttactacactataactttcctcctttctctacaggagaggctaaggctcaacgtggtgta
ggacgtcgtgaaatcggacatggtaacctggctcacagagcattgaaaagaatgattccg
gaagactatccttatgtagtacgtgtcgtttcagatatccttgaatcaaacggttcttca
tcgatggctaccgtatgtgccggaactttggccctgatggatgccggtgtgaaaattaaa
aaacctgtatcgggtatcgctatgggattgattaaaaacgcaggtgaagaaaaatatgca
gtgttgtctgacatccttggagacgaagaccacttgggcgatatggacttcaaagtgaca
ggtactaaagacggtatcacagctacccagatggatattaaggtagatggtctgtcttac
gaaatcctggaacgcgccttaaatcaggcaaaagaaggacgtatgcacatactcggtaaa
atagaagaaacaatctccgaaccacgtactgagctgaaagatcacgctcctcgtatcgaa
acaatgactattccgaaagaattcatcggtgctgtaatcggcccgggcggaaaaatcatt
cagggaatgcaggaagaaacaggtgcaacaatcactatcgaagaaatcgacaacgtgggt
cgcatcgagatctcaggaactaacaagaaatcgattgatgacgcaatccgcttgattaaa
ggtatcgttgctgttcccgaagtaggtgaggtatacaaaggtaaagttcgctctatcatg
ccttacggtgcatttgttgaattccttccgggaaaagacggtttactccatatctctgag
attgactggaaacgtcttgaaactgtagaagaagccggtattaaagagggtgacgagatc
gaagtgaaattgatcgatattgacccgaagacaggtaaattcaaactttcaagaaaagtt
ttattgccacgtccggaaaagaaataa
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