Bacteroides fragilis 638R: BF638R_3781
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Entry
BF638R_3781 CDS
T01691
Name
(GenBank) putative DEAD box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfg
Bacteroides fragilis 638R
Pathway
bfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF638R_3781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfg03019
]
BF638R_3781
03400 DNA repair and recombination proteins [BR:
bfg03400
]
BF638R_3781
Enzymes [BR:
bfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF638R_3781
Messenger RNA biogenesis [BR:
bfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF638R_3781
DNA repair and recombination proteins [BR:
bfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF638R_3781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_Crp_2
TrmB
ResIII
MarR_2
MarR
HTH_9
HTH_5
Rrf2
Reovirus_cap
HTH_20
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
CBW24230
UniProt:
E1WMX2
LinkDB
All DBs
Position
4446504..4448408
Genome browser
AA seq
634 aa
AA seq
DB search
MTYQEILKQYWGYDSFRDLQEDIITSIGNGKDTLGLMPTGGGKSITFQVPALAKEGLCIV
ITPLIALMKDQVQNLKKRGIKAIAIYSGMTRQEIVVALENCIFGDYKFLYISPERLDTEI
FRAKLRSMKISMITVDESHCISQWGYDFRPAYLKIADIRDLVPDAPVLALTATATPEVVK
DIQERLRFQEENVFRMSFERKNLAYIVRPTDNKNGELLHILNRIQGSAIVYVRSRRKTKE
TTELLVNEGITADFYHAGLDNATKDLRQKRWQNGESRVMVATNAFGMGIDKPDVRIVIHL
DLPDSPEAYFQEAGRAGRDGQKAYAVILYAKSDKTTLSKRIADTFPDKDYIKDVYEHLQY
HYQMAMGDGLGCMYDFSLEEFCRKFKYFPVPADSALKILTQAGYLEYTDEQDNASRIIFT
IRRDELYKLREMGEAAEKLIQMILRSYTGVFTDYAYISEQTLAVRTGLTRQQIYDLLVML
SKRRIVDYIPHKKTPYIIYTRERIDLHYLQIPRAVYEERKERYETRIHAMVEYVTSENVC
RSRMLLRYFGEKNEHNCGQCDVCLSHRAEPDISQSTFDGLREQICALLKEHPMTPAEIAS
HINTDKEQLSEVIRFMLDEGLLSSENGLLTEKTS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
gtgacttaccaagagattttaaagcaatactggggttatgattccttccgcgacctgcag
gaggacatcataaccagcattggcaatggaaaagacacactgggactgatgcccaccgga
ggcggaaagtcaattacgtttcaggttccggcccttgccaaagagggattgtgcattgtc
atcaccccactgattgctctaatgaaggatcaggtgcagaacctgaaaaagcgcggaatc
aaagcgatagccatctattcaggaatgacacggcaagagattgtggtggcattggagaac
tgcatcttcggcgactataagtttctatacatctctcccgaacggttggataccgaaatc
ttccgggccaaactccggtccatgaaaatcagtatgattacggtagacgaaagccattgc
atctcacaatggggatatgactttcgtccggcttatctgaaaatagcggatatcagggat
ctcgtaccggatgctccggtcttggcactgaccgccacggccactcccgaagtagtgaag
gacatacaggagcgcctccgtttccaggaagaaaacgtgttccgtatgagcttcgaacga
aagaatctggcatacatcgttcgccccactgataataaaaacggagagttgctgcacata
ctgaaccggatacaaggcagcgcgattgtatatgtacgaagccggcgaaaaaccaaagaa
acaaccgagctgctggtaaacgaaggaatcacggccgacttttatcatgcgggactggat
aacgcaaccaaagatcttcgccagaaacgatggcaaaacggagaaagccgggtgatggta
gctaccaacgcattcggtatgggcattgacaaaccggacgtacgtatcgtcatccacctg
gacctgcccgactcaccggaagcctactttcaggaagcgggacgggcgggacgagacgga
caaaaggcatacgcggtgatactctatgccaagtcggataaaacaacgctcagcaaacgc
attgcagatactttcccggataaagactatataaaagatgtgtacgagcatctgcaatat
cattatcagatggcgatgggcgacgggctgggatgcatgtatgacttcagcctggaagaa
ttctgccgcaagttcaaatattttcccgtacctgcagacagcgcactgaagatattgaca
caggcaggatacctggaatataccgatgagcaggacaatgcctcacggattatcttcacg
atccgccgggatgagttatataaactccgtgagatgggagaagccgcagagaaactgata
caaatgattctgcgatcttacacgggtgtctttacagactatgcctacatcagcgagcag
actctggcggtacgtacgggactgacccggcaacagatttacgacttgctggtgatgctg
agcaagcgccgtatcgtcgactacatcccgcacaaaaaaacaccttacattatatataca
cgtgagcggatagacctccattatctgcaaataccccgagcagtatatgaagaacggaaa
gaacgctatgaaacccgtatccatgccatggtggaatacgtcacttcggagaatgtctgc
cgtagccggatgctgctccgctacttcggagagaagaacgaacataactgcgggcaatgt
gacgtctgcctcagccaccgcgccgaaccggatatatcacaaagcaccttcgacggactg
agagagcaaatatgtgctctgctgaaagagcatccgatgactccggcggagatagcttca
cacataaatacagataaagagcagttgagcgaagtgatacggtttatgctggacgagggc
ttactgagctctgagaacggactgcttactgaaaaaacttcctga
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