KEGG   Brevibacillus formosus: BP422_13580Help
Entry
BP422_13580       CDS       T04939                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bfm  Brevibacillus formosus
Pathway
bfm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bfm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BP422_13580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bfm03400]
    BP422_13580
Enzymes [BR:bfm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BP422_13580
DNA repair and recombination proteins [BR:bfm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BP422_13580
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ASJ54498
UniProt: A0A220MHG3
LinkDB All DBs
Position
3009022..3009963
Genome map
AA seq 313 aa AA seqDB search
MELTPLFPFEPTSTEAIPEGPQWIGQVKWDGVRILTYYDGHEVKLFNRKLNERTFHYPEV
ANIRTYCRADSVILDGEIIALGSDGKPSFYEVMRRDGLRRLEKVPQIQKLVPVTYMVFDV
LYCNHEWVTSYPLSERQQILRKIITPTPHVQLVENFPDGDALYRVIEAQGMEGIIMKDAS
SSYLIDGKDQRWRKKKYYRDLIAVVGGVTLRNHIVNSLLLGLFDQQGSFWYIGHAGTGKL
TQTDWRALTERIQPLVQQKMAFVNKPPRAANTLWIQPEITVKIKFAEWKEGHSLRQPSIQ
GFVDIPLHQCVLE
NT seq 942 nt NT seq  +upstreamnt  +downstreamnt
atggaactaactccgctatttccttttgagcctaccagcacggaagccataccagaagga
ccgcaatggataggccaagtgaaatgggatggcgttcgcattcttacttactacgatgga
cacgaggtcaaactgttcaaccgaaaattaaatgaacggactttccattatccggaggtc
gccaatattcgcacgtactgtcgtgccgattctgtgattttggatggcgaaataattgct
ctcggctcggacggaaagccttctttttacgaggttatgaggagagatgggctgcgccgt
ttagagaaagtcccccagatacaaaagcttgtcccggtcacatacatggtctttgatgta
ctgtactgcaatcatgaatgggtaacctcctacccgctatcagagcgacaacaaatacta
cgcaagatcatcactcctactcctcatgttcagctagttgaaaactttccagatggagac
gctctttaccgtgtcattgaagcgcaaggcatggaaggaatcattatgaaggacgcgtca
agcagctacttgatcgatggaaaggatcagcgctggagaaagaaaaagtactaccgggat
ctcatcgctgtcgtaggcggcgttacacttcggaatcatattgtcaattcgttgcttctg
ggactcttcgatcaacaaggttctttttggtacatcggtcatgcaggtactggaaaattg
acgcaaacagactggcgtgctttaactgagagaatacagcccctcgtccaacagaagatg
gcttttgttaacaagccaccacgcgcagccaataccttatggatacagcctgaaatcacc
gtcaaaatcaaatttgcggagtggaaggaagggcattccttgcgacagccaagcatacaa
ggctttgtggatatccctctccatcagtgtgttttggaataa

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