KEGG   Paraburkholderia fungorum: OI25_6363Help
Entry
OI25_6363         CDS       T03799                                 

Definition
(GenBank) DNA ligase, ATP-dependent, family
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bfn  Paraburkholderia fungorum
Pathway
bfn03030  DNA replication
bfn03410  Base excision repair
bfn03420  Nucleotide excision repair
bfn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OI25_6363
   03410 Base excision repair
    OI25_6363
   03420 Nucleotide excision repair
    OI25_6363
   03430 Mismatch repair
    OI25_6363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfn03032]
    OI25_6363
   03400 DNA repair and recombination proteins [BR:bfn03400]
    OI25_6363
Enzymes [BR:bfn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OI25_6363
    6.5.1.6  DNA ligase (ATP or NAD+)
     OI25_6363
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OI25_6363
DNA replication proteins [BR:bfn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    OI25_6363
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     OI25_6363
DNA repair and recombination proteins [BR:bfn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OI25_6363
   NER (nucleotide excision repair)
    Other NER factors
     OI25_6363
   MMR (mismatch exicision repair)
    Other MMR factors
     OI25_6363
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AJZ62740
UniProt: A0A0D5VL28
LinkDB All DBs
Position
2:2685446..2687134
Genome map
AA seq 562 aa AA seqDB search
MKRFAALYTALDATTSTRDKLEALTSYFAVAAPEDAAWASYFLAGGKPRQSVPTRLLTEF
ACERAGLPAWLFEESYQAVGDLAETIAHILPPAQRSSELGLTQWIEQRVLLLRGLAPEEL
RTRLFGYWDELDWSGRFLLTKLIGGGFRVGVARQLVVRALAEIAGVDHKRIAQRMVGWTD
SQQKPDAARYLRLIAPEAPAEDTQQAVARHDSDLGLPYPFFLAHPLQADPETLGDPSQWL
IEWKWDGIRAQLVKRGGRVWLWSRGEDLITERFPEVAALGEALPDGFVIDGEILAWEPGA
VAPLPFARLQPRIARKTLTKKILADSPAALLAYDLLEAAGEDLRMTPLAGRRAQLDALAA
SLDSTLARDLLRVSPLVSGADWRELGALREESRARGVEGLMLKERESMYGVGRTKASGTW
WKWKIEPYAVDAVLVYAQRGHGRRASLYTDFTFAVWDEADGVRTLVPFAKAYSGLTDEEM
RQVDAIVRKTTIEKFGPVRSVRPTLVFEIGFEGIQASARHKSGVAVRFPRMLRWRVDKPI
DEADTLAMLKGFIDDAARPTGS
NT seq 1689 nt NT seq  +upstreamnt  +downstreamnt
atgaagcgtttcgccgccctctacaccgcgctcgatgcaaccacgtccacgcgtgacaaa
ctcgaggcgctcacgagttatttcgccgtggccgcgccggaagacgctgcgtgggcgtcg
tactttctggcaggcggcaaaccgcgtcaatcggtgccgacgcgcctgctgaccgaattc
gcatgtgaacgtgcgggcttgcccgcatggttattcgaggagtcctaccaggcagtgggc
gatcttgccgaaacgatcgcgcatatcctgccgcccgcgcaacgcagttccgaactcggg
ctcacacaatggatcgagcaacgcgtgctgcttttgcgcggtctcgcgccggaagaattg
cgcacgcgtcttttcggctactgggacgaactcgactggagcggccgctttttgctgacc
aagctgataggcggcggctttcgcgtcggcgtggcacggcaactggtggtcagagcgctt
gcggaaatcgcgggcgtggatcacaaacggattgcacagcgcatggtcggatggaccgac
tcgcagcagaagcccgacgcggcgcgctatctgcgtctgattgcgccggaggcgccggcc
gaggatacgcagcaagcggtcgcgcggcacgacagcgatctcggcttgccgtatccgttc
tttctcgcgcatccgttgcaggccgatccggagacgcttggcgatccgtcgcaatggctg
atcgaatggaagtgggacggcattcgtgcgcaactcgtcaagcgcggcggaagggtgtgg
ttatggtcgcgtggcgaggacctgatcacagagcgctttcccgaggtggccgcgttgggc
gaggcgttgcccgatggcttcgtcatcgacggggaaattcttgcgtgggagccgggcgcc
gtggcgccgttgccgttcgcgcgtcttcaacctcgaattgcgcgcaagacgttgacgaaa
aaaatactcgcggattcgcccgccgcgttgctcgcttacgacctgctcgaagccgccggc
gaagatctgcgcatgacgccgcttgccgggcggcgcgcgcagctcgatgcgttggcggca
tcgctcgacagcacgctcgcgcgtgacctcttgcgcgtgtcgccgctcgtatccggtgcg
gattggcgggagctgggcgcgttgcgcgaagaaagccgtgcgcggggtgtcgaaggattg
atgctcaaggagcgcgagtcgatgtacggtgtgggccgcaccaaagcgtcgggcacgtgg
tggaaatggaagatcgagccctatgcggtggacgccgtgctggtctacgcgcaacgcggc
catggtcgccgtgccagcctgtacaccgactttaccttcgcggtttgggatgaagcggac
ggtgtgcgcacgcttgtaccttttgccaaggcctattcgggcctgacggacgaagaaatg
cgccaggtcgatgcgatcgtgcgcaagacgacgatcgagaagttcggaccggtgcgcagc
gtgcggccgacgctggtattcgaaatcggcttcgagggcatccaggccagtgcgcggcat
aagtccggcgttgcagtgcgatttccgcgcatgctgcgctggcgcgtcgacaagcctatc
gacgaagcggacacgcttgcgatgctgaagggttttatcgacgatgcggcgcgccccaca
ggatcgtag

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