Paraburkholderia fungorum: OI25_8087
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Entry
OI25_8087 CDS
T03799
Name
(GenBank) viral (Super1) RNA helicase family protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OI25_8087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfn03400
]
OI25_8087
Enzymes [BR:
bfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OI25_8087
DNA repair and recombination proteins [BR:
bfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OI25_8087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
UvrD_C_2
AAA_11
Viral_helicase1
SH3_13
Ubiq_cyt_C_chap
AAA_16
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AJZ56254
LinkDB
All DBs
Position
pBIL:263998..266322
Genome browser
AA seq
774 aa
AA seq
DB search
MDEIVGRLSTLTVYNGKWARASVRIADGSFLTCVGETLLGLREGNDYRLAGWVREHARYG
RQLEVRAAVLEVPQDEGALRRHLRRNFAGCGERTAAKLIEWARALPGGLDALREQLVSNP
HAIDFSVVTKRPVRMSDDEGPEIAIYRNLSLRLGTSGVHDYLLRRLAGWVFERVGAQADP
VVAAWERISRNPYEAVRSLDGYGFTSADAIGRQLSFPPDHVFRLAALATHAVREGCERAG
HTFLMADEVARRITQYDAAVAFDVALRAAVELGEPIAVTEGRYYPLWLYNCELALAEHLG
RRLAVASAPITEAPREKLEREVRMAEWSMGESFRLDDSQREAMISMLTSTCSVHTLTGGP
GCGKTAMIEVLVQVVCSLGAGLRIVFCAPTGKAAKVLGARVQRLGMSSATVHATLGVEAD
GFAHNEENPLPADVVIADETSMNDLALTRALFDALPAGSHIVLLGDTDQLASVGPGQMLV
DLLELDADHQQLSITHRNDGGILEVVRQARAGKCDCVDRPDVRFSHGLPATDVAGIGKVI
GAYLRAVRRSGIEHVGLLMGARRGDVKVPGWNVTYLNDALREQLNAQGRRVPGTSLRLGD
RLMIRQNLRLEQGEEANGQMRYEQVVNGDTGTLAGCHLDATGHSVSYLVVTLDDGREIRY
PGTNLDALVLAYALTVHAAQGSEYREVIFICTDGHAGFMHRGIVYTAFSRTRKRLLVVAD
DEVLRRSCARPIPPRNSRLVQRACAAGAARRQARDTGLRGGPPVQCETSLRESG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatcgtcggtcggctctccaccctcaccgtctataacggcaagtgggcacgc
gcgagtgtccgtatcgccgatggctcattcctgacttgtgttggcgagaccctgctcggt
ctgcgtgagggcaacgattaccggctggccggatgggtgcgcgagcatgcccggtacggg
cggcagctcgaggttcgcgcggcggtgctggaggtgcctcaggacgaaggggcattgcgc
cggcatctgcgcagaaactttgccggctgtggcgagaggactgcggcgaagctgattgag
tgggcgcgcgcgctgcccggcgggctggatgcgctgcgcgagcagctggtatcgaatcct
catgcgatcgacttcagcgtcgtgaccaagcgtccggtgcgcatgtctgacgacgagggt
ccagaaattgcgatttaccggaacctctcgttgcgcctcgggaccagcggcgtgcacgac
tacctcctgcgccgtcttgcgggctgggtattcgagcgtgtcggggcgcaggcggacccg
gtggtagctgcctgggaacgcatttccagaaatccgtacgaggccgtccgctcactcgac
ggttacgggtttacttcggcagacgcgatcggccgccaactgtcatttccacccgaccac
gtcttccgtctggcggctctcgcaactcacgcggtacgtgaaggctgtgagcgcgccggc
cacacctttctgatggctgacgaagtcgcccgccgcatcacgcaatacgatgcggcggtg
gcgtttgatgttgcgctacgtgccgcggtcgagctgggcgagccaatcgcggtaactgaa
ggccgctattacccgctctggctgtacaactgtgaactggcgctggcggagcatctgggc
cggcgcctcgcagtagcctcggcgcccatcactgaggccccacgggagaaactggagcgt
gaagtgcgcatggccgagtggagcatgggtgaatcgttcagactcgacgacagccagcgc
gaggcgatgatcagcatgctgacgtcgacgtgctctgtgcacacgcttacaggcggcccc
gggtgcggcaaaaccgcgatgatcgaagtattggtgcaggtcgtgtgttccctcggcgcg
gggctccgaattgtgttctgtgccccaacgggcaaggcggcgaaagtactgggcgctcgg
gtgcagcgcctggggatgtcgtcggccacggtacacgcgaccctcggggtggaagccgac
ggcttcgctcacaatgaggagaacccgctgcctgcggacgtagtgatcgcagacgaaacg
tccatgaatgacctcgctctaacgcgtgcgctgttcgacgcgctgccggccgggtcgcac
atagtcctgttgggcgacacggaccagttggcatcggtcggaccgggacaaatgcttgtt
gacctgctggagctggatgcggatcaccagcaactttcgataacgcatcgcaacgatggc
ggaattctcgaggtcgtgcgccaggcgcgggccggcaaatgcgattgcgtagaccgcccg
gatgtaaggttttcgcacggactgccggcgaccgacgtcgctggcatcggcaaggtgata
ggcgcgtatctgcgcgcggtcagacgcagcggcatcgagcacgtaggcttgttgatgggc
gcgcggcgcggcgacgtgaaggtgccgggctggaacgtgacctatctgaacgacgcgctg
cgcgagcaactgaatgcgcagggccggcgcgtccccggtactagcctgaggctcggcgat
cgcctgatgatcaggcagaacctgcgtcttgagcagggagaagaagcgaatggccagatg
cgctatgagcaggtggtgaatggcgacacgggcacgctggccgggtgtcacctggacgcg
acgggccattcggtgtcgtacctggtggttacgcttgatgacgggcgcgagatccgctat
cccggcacaaaccttgatgcgctagttctcgcttatgccctgacggtgcacgcggcgcag
ggctcggagtaccgcgaggtcatcttcatctgcacggacggtcacgcgggcttcatgcat
cgcgggatcgtgtacacggcgttttcgcggactcgcaagcggctgctggtggtggcagac
gacgaggtgttgcgtcgcagttgtgcacgccctattccaccgcgcaattcacggcttgta
cagcgtgcatgtgcggctggtgccgcgcggcgacaggctcgcgacaccggtttacgaggg
gggccgccagttcaatgtgaaacctctttacgggagtctggatga
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