Branchiostoma floridae (Florida lancelet): 118414151
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Entry
118414151 CDS
T01074
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118414151
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118414151
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118414151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
Rad17
AAA_19
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
118414151
NCBI-ProteinID:
XP_035673880
UniProt:
A0A9J7MNN4
LinkDB
All DBs
Position
4:14388897..14410488
Genome browser
AA seq
1290 aa
AA seq
DB search
MSDQRHHRHRPEEMHHEKKKSKESKSSRASDQRSSKHHRHEHRHSGLDQSGGYDEMTSRR
IQEASCSRDVHQRDRKKESSDEGHGNKHGRSDRRREEEAEKYRHKHRKMERVGDRDKETY
RGKDVHVRDMAREDVRPRDKHGRMEGMREQEEEEEEWDRQEMWEFNWEEYRSTLNKIFFR
DEDFIVRGTPEYDDFWKFFHRYCKFQMKKSGDQRPARPHHSSPQQKTLGLPDKYDKRYRI
NFSIKTKDVEEKLKYLRTGSRTNDDEDLTPSRVAEFRLAWLHYIDFCQKQKLQKLAKLRH
DQASLPIHQYRDQIVQAVRQHRVVVVAGDTGCGKSTQVPQYLMSAGFTCIACTQPRRIAC
ISLAKRVGYETLNEYGSEVAYQVRFEGSKTDATRILFLTEGLLLRQVTTDPTLSQYSIIV
LDEVHERHLNGDFLLGVLRALLRAQEDLKMVLMSATINIKLFAGYFNGAPVIQVPGRLYP
IQLEYLPIKQEEQTSKSERLDPRPYLRVMQRIDHKYPGTERGDLLIFLSGMSEITAVVEA
GRLYAQQTKRWIVLPLHSTLSIEEQDKVFDIAPEGVRKCIVSTNIAETSITIDGVRFICD
SGKVKEMSYDPGAKMQRLQEFWISRASAEQRKGRAGRTGPGVCFRMYDESEYDNFQEYAT
PEIQRVPLDSTLLQMISMGLRNPRKFPFIEPPAMSSIENSVAFLKEQGALTEEETLTPIG
RMLARLPVDVVIGKMLIMGTVFHVIDPVLSIAAALSVQSPFHQSARTNPDAMHARKPLES
DHGDPFTLLNAFDEWIQVKAGGRNSSRKWCRRRGLEEQRFYEMVKLKEQFKDLLKDHGLL
EGEQDYYYREEERRRRHGERRRLQELKRRHDKGPRKRKVLKLEHEDIELSGGDDDDDDEV
DIKDIEFKLKHDLNQLQETSNQTRSFTLRDVLLLKVVLCSGLYPLVAIADDCNTYRRDSE
QVFHTKSKQFVVLHPTGVFCSNPEPLQLPHTEGKQGVAQLKGQVSSKHQLLAYTSLLETN
KPYLVNTMRIPAVQTLMLYAHCLDTNQDCTRIVSDYWLELTFPESEAAQLLLSSVIQLRV
TWAKLLGLRLQESSRRKKDDDDEDDTSRKARKLEKVLARKLTEFLSSDVEYSIRRLGNSE
IKNLFVGPLEVGSTANKPVPTLFSGECRPHPTKGGVQINDYLTYNCLQDDGMSVHSFMAH
LRNSWTCPTCQVDMAVTLLERLQHQDQCQNKQDVSVDESRQLSGPSSLERLRKPWFCTTC
QQEFSFTNTEILKHRRTHAQPAATGEGPTT
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaccaaagacaccacagacataggccggaggaaatgcaccatgaaaagaaaaag
agtaaggagagtaaaagttcaagagctagcgatcagaggagcagtaaacatcacagacat
gaacataggcactctggtttggaccagtctggagggtacgatgaaatgacaagtaggagg
atacaggaggcctcatgttctcgtgacgtacatcaaagagacagaaagaaggaaagttca
gatgaagggcacggaaacaagcatggtaggagtgatagaaggagggaggaagaagcagag
aaatacaggcacaagcacaggaaaatggagagagtaggagatagagacaaagaaacttac
agaggcaaggatgtgcatgttagggacatggcgagagaggatgtgagacccagggacaag
catggtaggatggagggaatgagagagcaggaggaggaggaggaggagtgggaccgtcag
gagatgtgggagtttaactgggaggagtacaggtcaactctcaacaagatcttctttcgt
gatgaagattttattgtcaggggaaccccagagtatgatgatttctggaagttcttccac
cgctactgtaagttccagatgaagaagtcaggagaccagagaccagccaggccacaccac
agctctccgcagcagaaaacactggggctgcccgataagtacgacaagaggtacagaatc
aacttctccatcaagactaaagatgtggaggaaaaactgaagtacttaaggacaggctca
aggacaaatgatgatgaggacctgacccccagcagagtggcagagttccgtctggcctgg
ctgcactacatcgacttctgtcagaaacagaagctccagaagcttgctaagctgcggcat
gaccaggccagcctgcccatccaccagtacagggaccagatagtgcaggcggtgaggcag
caccgggtggtggtggtggcaggggacaccggctgtgggaagtcgactcaggttccccag
tatctcatgtcggctggcttcacctgtatcgcgtgcacgcagccgcgccgcatcgcctgt
atctccctcgcaaaacgtgtcggctacgagaccctgaatgagtatgggtcagaggtcgcc
taccaggtcaggtttgagggaagtaagacagacgcgaccaggatcctgtttctcacagaa
ggcctgctgctgagacaggtgactactgaccccaccctgtcccagtacagcatcattgtc
ctggatgaggtccatgagaggcacctgaacggtgacttcctgctgggcgtgctccgagcg
ctgctgcgggcgcaggaggacctgaagatggtcctcatgtccgccaccatcaacattaaa
ctgttcgctgggtacttcaacggagcaccagtcatacaggtcccaggcagactgtacccc
atccagctggagtatctacccatcaaacaggaggagcagaccagtaagtcagagaggctt
gaccctcgaccttacctgagggtgatgcagaggattgatcacaagtaccccgggacagag
cgaggagacctgctgattttcctgagcgggatgtcggagatcacggcggtggtggaggct
ggccggctgtacgcacagcagaccaagcgctggatcgtgctgcccctgcacagcacactg
tccatagaggaacaggacaaggtgtttgacatcgcccctgagggtgtacggaagtgcatc
gtgtccacaaacatagctgaaacctccatcacaatcgacggtgtcaggtttatatgtgac
tcgggaaaggtgaaggagatgagctatgacccaggcgctaagatgcagcgtcttcaggag
ttctggatcagccgagcgagtgccgagcagagaaagggcagggcaggacggactggccca
ggtgtctgtttccgtatgtacgacgagtcagagtatgacaacttccaggagtacgccacc
cctgagatccagcgtgtgcccctggactccaccctgctgcagatgatatctatgggactt
cgcaaccccaggaagttccctttcatcgagcctccagccatgtccagtattgagaactct
gtggcttttctgaaggagcagggggcactgacagaggaagagacgttgactcccattggt
cggatgttggcacggctaccggtagatgtggtgattggcaagatgctcattatgggaact
gtgttccatgttatcgaccctgtgttgtccatagcagcagctttaagtgtgcagtctccc
ttccaccaatcagcacgcaccaatccagatgctatgcatgctcgaaaacccctggagtcg
gaccacggagacccctttactctgctgaatgcctttgacgagtggattcaggtgaaggca
ggagggcggaactcctccaggaaatggtgcaggaggagagggctggaggagcagaggttc
tacgagatggtcaaactgaaggagcagttcaaggacctgctgaaggaccatgggctgctg
gagggtgagcaggattattactaccgtgaggaggagaggaggaggaggcatggggagagg
aggagactacaggagctgaagaggagacacgacaaggggcccaggaagaggaaggtcctc
aagttggaacatgaggacatagaactgagtggtggagatgatgatgatgatgatgaggtt
gacattaaggacatcgagttcaagctgaaacacgacctgaaccagctccaggaaacgtcc
aatcagacgcgcagcttcacactccgtgacgtccttctcctcaaggttgtgctctgcagt
ggcctgtaccccttggttgccatagcagacgactgtaacacttacaggagagactctgag
caagtcttccataccaaatccaaacagtttgtagtgctgcaccccacgggtgtgttctgt
agtaaccctgagcccctccaactgccacacacggaggggaaacagggcgtggcacagctc
aagggacaagtcagcagtaagcaccagctgctggcttacacttctctactggagaccaac
aagccatacttggtgaacaccatgcggatccctgctgtacagaccctgatgctgtatgca
cactgtctggacaccaaccaggactgtaccaggatagtgtctgactactggctggagctg
accttccctgaatctgaggctgcacaactcctgctgtcctcagtcatccagctgcgggtc
acatgggccaaactgctggggctcaggctacaggagtcgagtagaagaaagaaggatgat
gatgatgaagatgacaccagtcggaaggcaaggaagctggagaaggtgttggctcgcaag
ctgacagagttcctgagcagtgatgtggagtactccatcaggaggctcggcaactctgag
atcaagaacctctttgtaggaccgctggaagtaggttccacagcaaacaaacctgtgcca
accctgttttccggtgagtgcagaccccacccgaccaaaggtggtgtgcagatcaacgac
tacctaacctacaactgcctgcaggatgatgggatgtctgtccacagcttcatggcgcac
ctgcggaacagctggacctgtcccacctgccaggtggacatggcagtcaccctgctggag
aggctgcagcaccaggaccagtgtcagaacaaacaagatgtgtctgttgatgagtcgagg
cagctgagcggcccgtccagcctggagagactgaggaagccatggttctgcaccacctgc
cagcaggagttctccttcactaacactgagatcctcaaacacaggagaactcatgctcaa
cctgctgccacaggggaaggacctacaacatga
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