Branchiostoma floridae (Florida lancelet): 118414689
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Entry
118414689 CDS
T01074
Name
(RefSeq) TNF receptor-associated factor 6-B-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04120
Ubiquitin mediated proteolysis
bfo04140
Autophagy - animal
bfo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118414689
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118414689
04140 Autophagy - animal
118414689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118414689
04121 Ubiquitin system [BR:
bfo04121
]
118414689
Enzymes [BR:
bfo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118414689
Membrane trafficking [BR:
bfo04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
118414689
Ubiquitin system [BR:
bfo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
118414689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
zf-RING_UBOX
zf-RING_2
TRAF3_RING
zf-RING_5
zf-C3HC4_3
DUF4885
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
118414689
NCBI-ProteinID:
XP_035674783
UniProt:
A0A9J7L3K9
LinkDB
All DBs
Position
4:33640..56074
Genome browser
AA seq
655 aa
AA seq
DB search
MKPGGRGAGYESVGMAGQSTGQTAPGTNPQVHRQQEEMTEGWDVLWDSPLESKYECPICL
MGLREPVQTNCGHRFCRYCILKSIRQDICPRFPIENSLFTGDQIFRENFAKREIFPLRVR
FSNKGSKEGMELSFLETHLSTCNFAFVECPLECGDTFWRKDIPDHLKNDCPRRLVKCLHC
FKEIPFDHQEIHLEECPTVVRPCEFCQQELTNEQMKRHIANECPRALVLCMFSTVGCNVE
KMERRNLAEHLQEFTQVHLRLLLNGLQTLKDAQIHRAGNHSDPHSLPARMTEVPYDPRRH
LPLLHEQQTLFLPPGQAAVTTQGSHGPFGSEVPHAVDQHSGGDGITRLSHSMQQMVMSPG
PFQPRLGETTWTSTEEREHYAEQVIPVTRVSPYPAVTSPYTAAAALGAHAYAHMEGSSGY
RTDGSSVSSPSRDSGAPSQDSGAPRSEDGSMADARALRTKVHTQETRIVEQQHYIRELEL
KLGSLQEKYFELEEKTKEKMCNGTYIWRIKEYSKLRQQAINGEATVRHSLGFYTSYYGYK
LCVRVNLNGVDSAHGTHISLFIHFMMGDNDDILEWPFQGKITLSILDQNSNPNQQAKHIT
ETLVAKPSYAAFQRPTTLRNHKGFGYMEFALLRSLESGQYIKNDTLIIRCTVQPQ
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaggagggaggggggctggatatgagtcagtgggaatggcgggtcagagcaca
ggtcaaactgcaccaggaacaaaccctcaagttcacaggcaacaggaggaaatgacggaa
ggctgggacgttctctgggactcccccctagagtccaagtacgagtgccccatctgtctc
atgggcctgagggagccggtgcagaccaactgtggtcatcgcttctgcagatactgcatc
ctcaaatccatcaggcaagatatttgccccaggtttcccatagaaaactcccttttcaca
ggggaccagattttccgggaaaattttgccaaacgagagattttccccctgagagtgagg
ttttcgaataagggctccaaggaggggatggaactttcctttctggagacccatttgagc
acctgcaactttgcatttgtggaatgtccgctcgagtgcggcgacaccttctggagaaaa
gacatccccgaccacctcaagaacgactgtccaagacgtctggtcaagtgtctacactgc
ttcaaggagataccgtttgatcatcaggagatccacctagaagaatgtcccactgttgtg
cgcccctgtgagttttgccaacaagagctaacaaatgaacagatgaagcgtcacattgcg
aatgaatgtcccagagccctggtgctgtgtatgtttagtacagtaggctgcaatgttgag
aagatggaaagacgtaacctcgccgaacatttacaagaattcacgcaggtccatctaaga
cttcttctaaacggtctacagactcttaaagatgctcagatccatcgtgcaggtaaccat
tccgatccgcactctcttcccgcgagaatgacagaggttccgtacgaccccagacgtcat
cttccgctgttgcacgagcagcagacactcttccttccccctggacaggctgcagtcacc
actcagggttcgcacgggccatttggctcagaggtgcctcatgccgtagatcagcatagc
ggtggtgacggcatcacaagacttagccacagcatgcagcaaatggtcatgtctcctggg
cccttccagcccaggctaggcgagaccacctggacatctactgaggagcgcgagcattac
gcagaacaggtcattcccgtgactcgtgttagtccgtatccggctgtgacgagtccatat
acggcagccgctgccttgggtgcgcacgcgtacgcacacatggagggcagcagcggctac
aggacagacggctcgtctgtaagctccccttcgcgagacagcggcgctccttctcaagac
agtggcgctccgaggtctgaagacggttccatggcagatgcacgagcgcttcgaacaaag
gtacacacccaggagaccagaatcgttgagcagcagcactacatcagagagctggagctg
aagcttgggtccctccaggagaaatacttcgaactggaagagaagacaaaagaaaagatg
tgcaacggcacatatatctggaggataaaagagtactcgaaattgcgacaacaggcaatt
aacggagaggcaactgtgagacacagtttaggtttttatacaagttactatggatataag
ttgtgcgtgagagtgaaccttaacggtgtggattccgcacacggtacacacatttctctt
ttcattcattttatgatgggtgacaatgacgacatattggaatggccgttccaaggaaaa
atcaccctatcaatcctagaccagaacagtaatcctaaccagcaagccaaacacatcaca
gagacacttgtagcaaagccgagctacgcggcgtttcaacgtccgacgacgctacggaac
cacaagggtttcggttacatggaatttgccctccttcgcagtttagagagtggtcagtac
ataaagaacgacacccttatcatcagatgtacggtacagcctcaatag
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