Branchiostoma floridae (Florida lancelet): 118422865
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Entry
118422865 CDS
T01074
Name
(RefSeq) DNA mismatch repair protein Msh2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118422865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118422865
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118422865
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
118422865
NCBI-ProteinID:
XP_035686573
UniProt:
A0A9J7LP80
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Position
9:complement(7050929..7073407)
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AA seq
930 aa
AA seq
DB search
MAVTPNQQLQLDNAQELGFLNFVRTMPEKPATTFRAFDRTEYYTAHGPDAIFAAKEIFKT
MGVVKTMGTGPNKMEYVNLSKMNFESLVRELLLVRQYRLEVYKNKGTAKNNDWELDIKAS
PGNLTQVEDFIFGSSGAVTSSGVLAVKLSGEGNNKVVGAGYADATMRKLGVCEFVDNDQF
SNLEALVIQTGPKECLIPAGENTPDMGRLRMVLERNGLLITERRKAEYSTKDNVQDLNRL
LKPKTKGEQVNSAALPEIEKTAAMASVSALIKYLELLGDETNFGQFKLETFDLNQYMRLD
AAAVRALNLLPTSLDGGNRFQSVAGLLTHCRTSQGHRLLTQWVKQPLMDKNRIEERLNVV
EALVEDAELRQTLQEEQLRKVPDFHRLAKKFQRKRANLQDCYRVYQALNIIPHLTEALEK
HAGSHRSLLMELFSNPIKELLYDFRKFQEMVETTMDMDRVDKHEFVIKPDFDDNLKELRE
KMNKLDEDIKSHLNEAARELKLEPNKVLKLETSTQLGYHFRVTLKEEKALRGNKKYRTLE
TSKNGVKFTDSDLQRMNEEYLKSKEAYADTQKAVVDEILGIAAGYVEPMGSLSDVIAQLD
ALVSFACASANAPIPYVRPKLTEKGEGGIKLVNARHPCLELQDDVQFIPNDASFDRDEQM
FLIVTGPNMGGKSTYIRQIGVNVLMAQIGCFVPCDSAEVCIVDCILARVGAGDSQLKGVS
TFMSEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEHIATKIGAFCLFATH
FHELTALADVVPTATNLHVTALTTGGTLTLLYKVKPGVCDQSFGIHVAELAHFPEKVIEF
ARQKALELEDYQSISLSGTAMEGTDAVAAKKRRIAKQEGEAIIQDFLSKVKDLPLATMTA
DEAQAAVQQLKEEVMARDNPYIHDVLARDF
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaacaccaaaccagcagcttcagctagacaacgcccaggagctgggatttctc
aacttcgtccggacgatgcccgagaaacctgccacaactttccgagcttttgatagaact
gagtactacacagcccacggtcctgatgccatctttgcagccaaggagatcttcaagacc
atgggggttgtcaagaccatgggaacaggtcccaacaagatggagtatgtgaacctgagt
aagatgaattttgaatcgttggtacgggaactcctgctggtccgccagtacagactggaa
gtctacaagaacaaaggaacagccaagaacaacgactgggagctggacatcaaggcctcc
ccaggaaacctgacccaggtggaagacttcatcttcggcagctcgggtgctgtgacctcc
tctggtgtcctggcagtcaaactatccggggagggaaacaacaaggtggttggtgctggg
tatgcagatgctaccatgaggaagctgggggtgtgtgagtttgtagacaacgaccagttt
tccaacctggaggccctggttatccagacaggaccgaaggagtgtctgatccccgcaggt
gagaacacacctgacatgggccgcctcaggatggtgctggagaggaacgggctgctcatc
acagagaggaggaaagctgagtactcaactaaagacaatgtccaggacttgaaccgactt
ctgaagcccaagaccaaaggagagcaggtcaactctgcagcactccctgaaatagagaag
acagcagcgatggcatctgtatctgcacttatcaagtacttagagctcctgggtgatgag
accaactttgggcagtttaaactggagacctttgacctgaaccagtacatgaggctggac
gctgcagcagtgcgggcgctcaacctgctcccaacctcactggatggaggtaaccggttc
cagtctgtggcaggactactgacccactgtaggacatcccaaggtcacaggcttcttact
cagtgggtcaaacagccgctcatggacaagaacaggatcgaggagagattgaatgttgta
gaagcacttgttgaggatgctgaactgaggcagacattgcaggaagaacagctgcgaaaa
gtcccagacttccaccgcctggccaagaagttccagaggaagagggccaatcttcaggac
tgttacagggtgtaccaggccctgaacatcatcccccacctgaccgaggccctggagaaa
catgcagggtcccacaggagcctcctcatggagctgttctccaatcctatcaaggagctt
ctgtacgacttcaggaagttccaggagatggtggagacgaccatggacatggaccgggtg
gacaagcacgagttcgtcatcaaaccggacttcgacgacaacctcaaggagcttagagag
aaaatgaacaaactggatgaagacatcaaaagtcacctgaatgaggctgcacgggaactg
aagctggaacccaacaaggttctgaagttagagacaagcacacagctaggctaccacttc
agggttacactcaaggaggagaaggctctccgtggcaacaagaagtaccgcaccctggag
accagtaagaacggggtgaagttcacggacagcgacctgcagaggatgaacgaggagtat
ctgaagtccaaggaggcgtacgctgacacacagaaggccgtggtggatgagatcctgggt
atagcagctggatatgtggaacctatggggagcttgagtgatgtcatcgcacagctggat
gcattagtcagttttgcttgtgcttcagcgaatgctccaatcccatatgtcagaccaaag
ctgacagagaaaggggaggggggcattaagctggtgaatgctcgacacccctgtctggaa
ctccaggatgatgtgcagttcatcccgaatgatgccagctttgacagagatgaacagatg
ttccttattgtgactggtcctaacatgggagggaagtcaacatacatcagacagatcgga
gtgaatgtgctgatggcccagattggttgttttgtgccgtgcgactctgcggaggtgtgt
atcgtggactgtatcctggctcgagtgggtgcaggggacagccagctgaagggtgtgtcc
acgttcatgtccgagatgctggaaacagcgtccatcctcaggtctgctacaaaggactcc
ctcatcatcatagatgagcttggcagggggacgtcaacctacgatggctttggtctggcc
tgggccatatcagaacacatagccaccaagatcggagccttctgtctgtttgccacccat
ttccacgagctgacggccctggcagacgttgttcctacggcaaccaacctccatgtcacc
gcccttaccacggggggaactctcaccttgctttacaaggttaaaccaggggtttgtgat
cagagttttggtatccatgtggctgaactggcacacttcccagagaaagtcattgagttt
gccagacagaaggccctggagctggaagactaccagagtatctccctgagtgggactgcc
atggaggggacagatgctgtggcagccaagaagagaagaattgccaagcaggagggtgag
gccatcatacaggacttcctgtccaaggtcaaggacctcccgctggcgaccatgacagct
gacgaggcgcaggcagcggtgcagcagctgaaggaagaggtcatggctcgggacaacccc
tacatccacgatgtcttggcgcgagacttctaa
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