KEGG   Branchiostoma floridae (Florida lancelet): BRAFLDRAFT_69217Help
Entry
BRAFLDRAFT_69217  CDS       T01074                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Pathway
bfo03030  DNA replication
bfo03410  Base excision repair
bfo03420  Nucleotide excision repair
bfo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BRAFLDRAFT_69217
   03410 Base excision repair
    BRAFLDRAFT_69217
   03420 Nucleotide excision repair
    BRAFLDRAFT_69217
   03430 Mismatch repair
    BRAFLDRAFT_69217
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfo03032]
    BRAFLDRAFT_69217
   03400 DNA repair and recombination proteins [BR:bfo03400]
    BRAFLDRAFT_69217
Enzymes [BR:bfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BRAFLDRAFT_69217
    6.5.1.6  DNA ligase (ATP or NAD+)
     BRAFLDRAFT_69217
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BRAFLDRAFT_69217
DNA replication proteins [BR:bfo03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BRAFLDRAFT_69217
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BRAFLDRAFT_69217
DNA repair and recombination proteins [BR:bfo03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BRAFLDRAFT_69217
   NER (nucleotide excision repair)
    Other NER factors
     BRAFLDRAFT_69217
   MMR (mismatch excision repair)
    Other MMR factors
     BRAFLDRAFT_69217
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 7228935
NCBI-ProteinID: XP_002595387
JGI: 69217
UniProt: C3Z7P4
LinkDB All DBs
AA seq 952 aa AA seqDB search
MAQRSISSFFAPRAKTPKQDTAATGHKSPLKTKNGSPPAFAPGDDSPVKSLPRKKKARRI
IDSDDDDEDEEENVAMEIEPSKSADEQKEAKDVEKTPKEVEKVKDESEDVPSPKMPRVTY
NGPNLQSPGGIPKRKTARKQLPTPKRKLVEIKSPKSNGHTSPTAEEEESSAKKVKTEKKE
EKEEKTEEKMEEDSPDEEVKEKVKDEEEVVQQNKKKKSPKPKKEKQSPKSVDKKKKIKEE
PGEKAKESAGPSEDSMDSLFAAVIRKAGEATAEEEKEETEEKKEKSTEDLKSPSDKKAVK
KEEDSSKKSSSGISSFFSPKRSSQPTDESSEKKPSPKPAAKPMAAFFKPKQEADKTVPYL
ALAKTFEAIEEVRARLKITEILCNFFRSVIALTPDDLVQCVYLCLNKVGPAYEGLELGIG
ETVLMKAIAEATGRKMAQIKTDAQEKGDLGIVAEVMTKKINFIKGMFVACRQSEARYLIR
SLGGKLRIGLAEQSVLTALAHAATLTPAGKDVLDAGKGKSSDALKKKLEDAALILKTTYC
EMPNYDAVISAMLKHGLEELPKHCKLTPGTPLKPMLAHPTKGVSEVLRRFEGAEFTCEYK
YDGERAQIHMLENGEIHIYSRNQENNTSKYPDIIERMPKVNHDDVTSCIIDSEAVAWDPE
NKKILPFQVLSTRKRKDADQSEIKVQVCVYAFDLLYLNGQSLVREPFRKRREMLRESFNE
VEGEFVFATSMVSGNTEEIAVFLDASIKDSCEGLMVKTLDKDATYEIAKRSHNWLKLKKD
YLDGVGDTLDVVPIGGFLGTGKRTGKYGGFLLACYSEEDEEFQSICKIGTGFKDEELEQH
TEFFKNHVVDKPKSYYRYDSSVEPDHWFDAVQVWEIKCADLSISPVHKAAEGIVDPEKGI
SLRFPRFLRIRDDKKPEEATSAQQVAEMYRNQDQVKNQQSNEKSEPADDDFY
NT seq 2859 nt NT seq  +upstreamnt  +downstreamnt
atggctcagcgatctatatcgtcgtttttcgcgcccagagccaagactccgaaacaggac
acagcagcgactggacataagtcaccactcaagacaaagaatggctcccctccggccttt
gcaccaggggatgactccccagtcaagtccctgccgcgtaaaaaaaaggcgcggcgcatc
atcgacagtgatgatgatgatgaagacgaggaagagaacgttgccatggaaatagaacca
agcaaatcagcagatgaacagaaggaagcaaaggatgttgagaagacccccaaggaagtg
gagaaggtgaaagatgaaagtgaggatgttccgtctcccaagatgccgagggtcacgtac
aacggacccaacctgcagtctccggggggcatcccgaagagaaagactgctcgcaagcaa
ctccccactccgaaacgcaagcttgtggagataaagagcccgaagtccaacgggcacaca
tcgcccactgctgaggaggaggagtccagcgccaagaaagtgaagacagaaaaaaaggaa
gagaaagaagaaaagacagaagaaaagatggaggaggattcccctgatgaggaagtgaag
gaaaaagtaaaggatgaggaagaagttgtgcaacaaaacaagaagaagaaaagcccaaag
cctaagaaagagaagcagagtccaaaatctgttgacaagaagaagaagataaaggaagaa
ccaggggagaaggctaaggagtccgctggtccttctgaagactccatggattctctgttt
gctgctgtcatcaggaaggcaggagaagcaactgctgaagaagagaaggaggaaacagag
gaaaagaaagaaaagagcactgaagacttaaagtcaccctcagacaagaaagcagtgaag
aaggaggaagacagcagcaagaaatccagctcaggaatcagctccttcttctcccccaag
agatcctcccagcctactgatgagtccagtgaaaagaagccctccccaaaacctgctgcc
aagcccatggctgccttcttcaaacctaaacaggaggctgacaaaacggttccatacctt
gccttggccaagacgtttgaagccattgaagaagttcgagccaggttgaagattacagag
atcctttgtaacttcttccgttcggtgattgcgctgaccccagatgaccttgtgcagtgt
gtgtacctgtgcctgaacaaggtcggtccggcgtacgagggtctggagctcgggatcggg
gagaccgtgctgatgaaggccatcgccgaggcaacgggaaggaagatggctcagatcaaa
acggacgctcaggagaaaggagacttgggaatagtggctgaggtcatgacgaagaagata
aacttcatcaagggcatgtttgttgcatgtcggcagtctgaggcgcggtaccttatccgg
tcgctagggggcaagttgaggatcgggctcgctgagcagtccgttctgacagcgctggcc
cacgcagcaactctcactccagctgggaaagatgtgcttgatgcagggaagggaaagtct
tcagatgcactgaagaagaagttagaggatgctgcactcatactcaagactacgtactgt
gagatgccgaactatgatgccgtcatctccgccatgctgaagcacgggttggaagagttg
cccaaacactgcaagctgacgcccggcacccccctcaagcccatgttggcgcatcccacc
aagggggtgagcgaggtgctgcgcaggtttgagggggcagagttcacctgcgagtacaag
tatgatggcgagagggcacagatccacatgctggaaaacggagagatccacatctacagc
agaaaccaggaaaacaacacctccaagtacccagacatcattgaacgcatgccaaaggtc
aaccacgatgatgtcacttcctgtatcattgactccgaggcggtagcctgggacccggag
aacaagaagatcctgccattccaggtgctcagtaccaggaaaaggaaggatgcagaccag
tcggaaattaaggttcaggtgtgtgtgtacgccttcgacctgctgtacctcaatggacag
tccctggtacgagaaccgttccgcaaacgtcgggagatgctgagagagtcgttcaatgag
gtggagggagagtttgtgttcgccacatccatggtgtcaggaaacactgaggagatcgca
gtgtttctggatgcctccatcaaagatagctgcgagggtctgatggtgaagactcttgat
aaggatgccacctacgagattgccaagagatcacataactggctcaagttgaagaaggat
tacctggatggagttggcgacacgctggatgtggtgccgatcggaggcttcctgggcaca
gggaagaggacagggaagtatggaggcttcctattggcctgttacagtgaagaggacgaa
gagttccagtctatctgcaagattggtacaggcttcaaagatgaagaactagagcagcat
acagagttcttcaagaaccatgttgttgacaagcccaagtcgtactatcgctatgacagc
agtgttgagccggaccactggtttgatgcagttcaggtgtgggagatcaagtgtgcggat
ctgtccatctcaccggtgcacaaggctgctgagggcatcgttgacccagagaaggggatc
tcgctccgtttcccacgattcctgcgtatccgtgacgacaagaagccagaggaggcaaca
agtgcacagcaggttgctgagatgtaccgtaaccaggaccaagtgaagaaccaacagtcc
aatgagaaatctgaaccggccgacgacgacttctactga

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