Brachybacterium ginsengisoli: CFK41_07515
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Entry
CFK41_07515 CDS
T05099
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bgg
Brachybacterium ginsengisoli
Pathway
bgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK41_07515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgg03019
]
CFK41_07515
03009 Ribosome biogenesis [BR:
bgg03009
]
CFK41_07515
Enzymes [BR:
bgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFK41_07515
Messenger RNA biogenesis [BR:
bgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFK41_07515
Ribosome biogenesis [BR:
bgg03009
]
Prokaryotic type
rRNA processing factors
CFK41_07515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATG54627
UniProt:
A0A291GWQ2
LinkDB
All DBs
Position
1693659..1696487
Genome browser
AA seq
942 aa
AA seq
DB search
MADSTHEPENDSSETTQNPPARRRRRAAGAPAGAPAFTPPTVPAPESTAPRTVVAPQDSS
STEAAPTTTPKRPRRRAGAPAGAPVVQAVQEPVVEEPAEQEPAVEEPAEQEPAVEEPAAE
EPVVEDEVTDDSPVVDDLRALASARGEKSTEDDDRVRRREQVQMDFASLLFQAPTPQPRT
TVAPQDSADEESDEQDEPDEQDAQDAPEEERSTRSRRGRSRSRRSSQRDQGTAEDSSDSA
DGSAEETADESSDEDESEDRSSSSNGSSRRRRRRGGRGRRGRGRGEDDGSEGDSEETEDQ
DPGDRSSREDSESEDDAQGADSGPDAENGSGSSSSRRRRRRRRSGSGGNVDSGSTDDPPN
TVVKVREARDEVKAVKGSTRLEAKRQRRREGRDAGRRRNVITEAEFLARRESVKRSMVVR
ERPGRTQIAVLEDDVLVEHYVAQKAQTSMVGNVYMGKVQNVLPSMEAAFVDIGKGRNAVL
YAGEVNWDAVGLEGQPRRIELALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVP
GGSMTGISRKLPDTERARLKKIMRQIIPEDAGVIVRTAAEGASEEELTHDVERLRAQWDK
IQKAQKSRNAPVALSQEPDIAIKVVRDVFNEDFTSLIVEGGKVYDDVHAYVSDVAPDLLE
RVTKHVGEKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGSGG
SLEETVTKNNIESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTK
HQVAEVTSLGLVQMTRKRVGQGLVETFSTTCEHCNGRGLVVDVDGDHQHGGGSGGNGGGN
GGDEGSKSSKRRGRRSRGGAKDEGESTEDGADETQGDVHRLEDDENSRAQARATIASIAA
ASGGGSHAEDAVDAVDAVDAVDAEGAGEQASTDWEQDAPRQG
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggctgacagcacccacgaacccgagaacgactcgtcggagaccacgcagaacccgccg
gcacggcgtcgccgtcgcgccgccggtgcaccggcgggagccccggcgttcaccccgccg
acggtcccggcgcccgagagcaccgctccccgcaccgtcgtcgcgccgcaggactcctcg
agcaccgaggcggcaccgaccaccaccccgaagcgcccgcgccgtcgcgccggggctcct
gccggtgccccggtggtccaggcggtccaggagccggtcgtcgaggagcctgccgagcag
gagcctgcagtcgaggagcccgccgagcaggagcctgcagtcgaggagcccgctgccgag
gagcccgtcgtcgaggacgaggtgaccgatgacagcccggtcgtcgacgacctgcgtgcg
ctggcctcggcccgcggcgagaagtccaccgaggacgacgaccgcgttcgccgtcgcgag
caggtccagatggacttcgcctccctcctgttccaggcgccgaccccgcagccccgcacc
accgtcgccccgcaggactcggccgacgaggagtccgacgagcaggacgagcccgacgag
caggacgctcaggacgcccccgaggaggagcgcagcacccgctcgcgccgcggccgcagc
cggtcgcgccgctcgtcgcagcgcgaccaggggaccgccgaggactcctcggacagtgcg
gacggctccgccgaggagaccgcggacgagtcctccgacgaggacgagtccgaggaccgc
tcctcgagttcgaacggcagctcccgtcgtcgtcgccgccgcggaggacgcggtcgtcgc
ggccgcggccgcggcgaggacgacggctccgagggcgactccgaggagaccgaggaccag
gaccccggcgatcggtcctcccgcgaggactccgagtcggaggacgacgcgcagggcgcg
gactccggtcccgacgccgagaacggctccggctcctccagctcccgtcgtcgccgtcga
cgccgccgctcgggcagcgggggcaacgtcgactccggctccaccgacgatccgccgaac
accgtggtgaaggtgcgcgaggcacgggacgaggtcaaggccgtcaagggctcgacccgt
ctcgaggcgaagcgccagcgccgccgcgaggggcgcgacgccggtcgccgccgcaacgtc
atcaccgaggccgagttcctggcccgtcgtgagtccgtcaagcgctccatggtggtgcgc
gagcgcccgggccgcacccagatcgccgtgctcgaggacgatgtgctcgtcgagcactac
gtcgcccagaaggcgcagacctcgatggtcggcaacgtctacatgggcaaggtccagaac
gtgctgccctccatggaggccgcgttcgtggacatcggcaagggccgcaacgccgtgctg
tacgccggcgaggtcaactgggacgccgtgggcctcgagggccagccgcgccgcatcgag
ctcgcgctgaagagcggcgacccggtgctggtccaggtcaccaaggacccgatcgggcac
aagggcgcccggctgaccagccagatctcgctgcccggtcgctacgtcgtgttcgtcccc
ggtggctcgatgaccggcatctcccgcaagctgcccgacaccgagcgggcgcggctgaag
aagatcatgcgccagatcatccccgaggacgcgggcgtcatcgtgcgcaccgccgccgag
ggcgcgagcgaggaggagctgacgcacgacgtcgagcgcctccgcgcccagtgggacaag
atccagaaggcccagaagagccgcaacgcccccgtcgcgctctcccaggagcccgacatc
gcgatcaaggtggtccgcgacgtcttcaacgaggacttcacctcgctgatcgtcgagggc
ggcaaggtctacgacgatgtccacgcctacgtctccgatgtggcgcccgacctgctcgag
cgggtcaccaagcacgtcggcgagaaggacgtcttcgccaagcaccgcatcgacgagcag
ctgctgaaggcgatggaccgcaaggtctacctgccctccggcgggtcgctggtcatcgac
cgcaccgaggcgatgaccgtcatcgacgtgaacaccggcaagttcaccggctcgggcggc
tccctcgaggagaccgtcaccaagaacaacatcgagtcggccgaggagatcgtgcgccag
ctgcggctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtcctcgag
tccaaccgcgacctcgtgctgcgtcgcctggtcgagtgcctgggccgggaccggaccaag
caccaggtcgccgaggtgacctcgctgggcctggtgcagatgacccgcaagcgcgtgggc
cagggtctcgtcgagaccttctccaccacctgcgagcactgcaacggccgcggacttgtc
gtggacgtcgacggcgatcaccagcacggcggcggctccggcggcaacggcggcgggaac
ggcggcgacgagggctcgaagtcctcgaagcgtcgtggccggcgctcgcgcggcggggcg
aaggacgagggcgagagcaccgaggacggcgccgacgagacgcagggcgacgtgcaccgc
ctcgaggacgacgagaacagccgagcccaggcccgggccacgatcgcctcgatcgccgcg
gcctccggcggcggctcgcatgccgaggacgctgtggacgctgtggacgctgtggacgcc
gtggacgccgagggtgccggcgagcaggcctcgaccgactgggagcaggacgcaccccgt
caggggtga
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