KEGG   Bordetella genomosp. 13: CAL15_11970Help
Entry
CAL15_11970       CDS       T05441                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bgm  Bordetella genomosp. 13
Pathway
bgm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bgm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CAL15_11970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bgm03400]
    CAL15_11970
Enzymes [BR:bgm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CAL15_11970
DNA repair and recombination proteins [BR:bgm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CAL15_11970
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ARP95027
UniProt: A0A1W6ZCK3
LinkDB All DBs
Position
2670819..2673335
Genome map
AA seq 838 aa AA seqDB search
MPASLKTYREKRNFSVTSEPAGGGRANTREPAFVIQKHWATRLHYDLRLELDGAMKSWAV
PKGPSYDPTIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
EGHLKFTLRGVKMQGQWALVRLKRGDEKQPTWLLIKDRDELARPDAEFSVVDEMPDSVVP
LRGKRRAASTRSRQTEQAPAVEAAMPGVASDMPRTLKPQLATLVDRAPASAADWLYEIKY
DGYRILARIENGQARLYTRNGHDWTDRMPHLAEALARAKADAWVDGEIVVLTDQGTPSFQ
ALQNAFDNGRTAGIQFFAFDLPYVAGRDLRGEPLTVRRALLEQLVAPIRRKAVQLSATLD
AGPSELVRTACGMGLEGIIGKRRDSTYVSRRSDNWIKLKCGQRQEFVIVGYTDPGGRRVG
FGSLLLAVHDDEGGLRYAGNVGTGFDDDMLRRLKQQLDALRTDRSALRSRAGVEGRPHWV
RPELVAEVSFGEWTQGGHVRHPVFRGLRGDKPAGAIVRERPQAPPKETPRATGSKPATTR
PASKSSSGKTASGRLSSPERVIDPSTGLTKLDLARYYGLVAPLMVPHLKGRPVAFLRAPQ
GIHHQLFFQKHQDGTIPDVRNLPEKLYPDHPPMMEVATDMGILSAAQMNVVEFHTWNAVK
TSIARPDRMLFDLDPGDGVAWPAIREGAQLVQALLRELDLACWLKTSGGKGLHVVVPLRK
QYDWDAVRQFSEVIVRHLARTLPQRFVAKSGPKNRVGKIFVDYLRNGFGATTVAAWSARA
RSGMGISVPIAWDELPRLSGAAQWTIANAHDRLDVGNAPWDDYTPQSLGKAMAILEFR
NT seq 2517 nt NT seq  +upstreamnt  +downstreamnt
atgccggcctcgctgaagacctatcgggaaaagcgcaacttctccgtcacctcggagccg
gccggcggcggccgcgccaacacgcgcgagccggccttcgtgatccagaaacactgggcc
acccggctgcactatgacctgcgcctggaactggacggcgcgatgaagagctgggccgtg
ccgaagggccccagctacgaccccaccatcaagcgcatggccgttcaggtcgaggaccac
cccatcgcctacaaccagttcgaaggcgagattcccaaggggcagtacggcgcgggcaag
gtcatcatctgggacgaaggcacctggcagcccgtgggcgaccctcgcaaggggtatcgc
gaaggccacctgaagttcacgctgcgcggcgtgaagatgcagggtcagtgggccctggtg
cgcctgaagcgcggggacgaaaagcagccgacgtggctgctgatcaaggaccgcgacgaa
ctggcccgtcccgacgccgagttcagtgtggtggacgaaatgcccgacagcgtggtcccg
ctgcgcggcaagcggcgcgcagcgtcgacgcggtcgcggcagacggaacaggcgcctgcc
gtggaagcggccatgcccggcgtggccagcgacatgccgcgcacgctcaagccgcagctg
gccacgctggtggaccgcgcgcccgcctccgccgcggactggctgtacgagatcaagtac
gacggctaccgcatcctggcgcgcatcgagaacgggcaggcgcgactctacacgcgcaat
ggccacgactggaccgaccgcatgccgcacctggccgaagccctggcgcgggccaaggcc
gatgcctgggtggacggcgagatcgtcgtgctgaccgaccagggtacgcccagcttccag
gcgctgcagaacgccttcgacaacgggcgcacggcaggcatccagttcttcgccttcgac
ctgccctacgtggcgggccgcgacctgcgcggcgaacctttgacggtgcggcgcgcgctg
ctggaacagctggtggcgccgatccggcgcaaggccgtgcagctcagcgccacgctggat
gccggcccgagcgaactggtgcgcacggcttgcggcatgggcctggaaggcatcatcggc
aagcgccgcgactccacctatgtgtcgcgccgctcggataactggatcaagctgaagtgc
ggccagcggcaggagttcgtgatcgtgggctacacggatccgggcgggcggcgtgtgggc
ttcggatccctgctgctggcggtgcacgacgacgagggcggcctgcgctacgcgggcaac
gtgggcaccggcttcgacgacgacatgctccggcggctgaagcagcagctggacgccttg
cgcaccgaccggtccgcgctgcgcagccgcgcgggcgtcgaaggccggccgcactgggta
cggcccgaactggtggccgaggtgtcgttcggggaatggacccagggcgggcacgtgcgc
catccggtgttccgggggctgcgcggcgacaagccggcgggcgccatcgtgcgcgagcgg
ccgcaggcgccgccgaaggaaacgccgcgcgccacgggcagcaagcccgcgacgacccgg
cccgcgtcgaagtcgtcttcgggcaagacggcgtcgggacggctgtccagtcccgagcgc
gtcatcgatccgtccacggggctgaccaagctggacttggcccgctactacgggctggtc
gcgccgctgatggtgccccacctgaaaggcaggcccgtcgccttcctgcgcgccccccag
ggcatacatcatcagctgttcttccagaagcaccaggacggcaccatccccgacgtccgg
aacctgcccgagaagctctaccccgaccacccgccgatgatggaagtggcgaccgacatg
ggcattctgtcggctgcgcagatgaatgtggtggagttccacacctggaacgcggtgaag
accagcatcgccaggcccgaccgcatgctgttcgacctggaccctggcgacggcgtggcg
tggcccgccattcgcgagggcgcgcagctggtgcaggcgctgctgcgcgaactggacctg
gcgtgctggctgaagaccagcggcggcaagggactgcacgtggtcgtgccgctgcgcaag
caatacgactgggacgccgtgcggcagttctccgaagtcatcgtgcgccacctggcccgc
acgctgccgcagcgcttcgtggccaagagcggcccgaagaaccgcgtgggaaagatcttc
gtcgactacctgcgcaacggcttcggcgccaccacggtggcggcctggtccgcgcgggcg
cgttccggcatgggcatctcggtacccatcgcgtgggacgaactgccgcgactgtccggc
gccgcgcaatggacgatcgccaatgcgcacgatcgcctggacgtggggaacgcgccgtgg
gacgactacacgccgcagtcgctgggaaaggccatggcaatcctggagttccgataa

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