Bordetella genomosp. 13: CAL15_23740
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Entry
CAL15_23740 CDS
T05441
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bgm
Bordetella genomosp. 13
Pathway
bgm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bgm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAL15_23740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgm03021
]
CAL15_23740
03400 DNA repair and recombination proteins [BR:
bgm03400
]
CAL15_23740
Enzymes [BR:
bgm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAL15_23740
Transcription machinery [BR:
bgm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAL15_23740
DNA repair and recombination proteins [BR:
bgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAL15_23740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ARP97122
UniProt:
A0A1W6ZII8
LinkDB
All DBs
Position
complement(5267567..5271679)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQSVPFLLATQLQSYLTFLQSETPSAERADDGLQAAFSSI
FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKE
VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMNPDSILAHFFDFDNFELKSEG
GMMEFVPERWKGEMARFDITDRDGKVIVEKDKRINAKHLRDMANAGIQRVSVPEDFLYGR
VLAKNTIDADTGEIIAHANEEITEGVLATLRAANVREIQTLYTNDLDRGPYISQTLRTDE
TVDQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGDDS
NGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSDQIDYLSAIEESHYVIAQANAALDAEGRFTDDLVACREAGETMLTSPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQALRGGVVDHVDAERVVIRVNDDENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVRRG
DVVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDESGIVYIGAEVGADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGAAITKPYLADLDRWQWFDIR
LADEQHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGYRIADMLRDERTAQVKNIRAYLEKVYNTTGMGARIDELSDEEVIEMAQNLKNGVPF
ATPVFDGATEEEITQMLELAYPDEVAKRMQLTPSRTQAWLFDGRTGEQFERPVTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagcttcgccaagcgtgaggac
gtgcaaagcgttcctttcctgcttgcgactcagcttcaatcctacctaactttcctgcaa
tccgaaacgccctcggccgaaagagcggatgatggcttgcaggcggcgttctcgtcgatt
tttcccattgtcagtcacaacgggatggcgcgcttggagttcgtcagctacgcgctgggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgcggcctgacctatgcgtcgcccctg
cgcgccaaggtccgcctggtgctgctggaccgtgaagtcagcaagcccaccatcaaggaa
gtgaaggaacaggaagtctacatgggcgagattccgctcatgacgaccaccggttcgttc
gtcatcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgctcgcctggcgtgttc
ttcgagcacgaccgcggcaagacgcacagctcgggcaagctgctgttctcggcccgcgtg
attccctaccgcggctcgtggctggacttcgaattcgatcccaaggacgtgctgttcttc
cgcgtcgaccgccgccgcaagatgccggtgacgatcctgctgaaggccatcggcatgaac
cccgattcgatcctggcgcacttcttcgacttcgacaacttcgaactgaagagcgaaggc
ggcatgatggaattcgtgcccgagcgctggaagggcgagatggcccgcttcgacatcacc
gaccgcgatggcaaggtgatcgtcgagaaggacaagcgcatcaacgccaagcacctgcgc
gacatggccaatgccggcatccagcgcgtctccgtgccggaagacttcctgtacggccgc
gtgctggccaagaatacgatcgacgccgacaccggcgagatcatcgcgcacgccaacgag
gaaatcaccgaaggcgtgctggccacgctgcgcgcggcgaacgtgcgcgagatccagacg
ctgtacaccaacgacctggatcgcggtccgtacatctcgcagacgctgcgcaccgacgaa
accgtcgaccagaccgctgcccgcgtggccatctaccgcatgatgcgccccggcgaaccg
cccaccgaggaagccgtcgaggccctgttccagcgcctgttctacagcgaggaaacctac
gacctgtcgcgcgtgggccgcatgaaggtcaacagccgtctgggccggggcgacgactcc
aatggtcccatgacgctgaccaacgaggacatcctcgagaccatcaaggtgctggtcgag
ctgcgcaacggccgtggccagatcgacgacatcgaccacctgggcaatcgccgcgtgcgc
tgtgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgcgtcgagcgcgcc
gtgaaggaacgcctgggccaggccgaaaccgaaaacctgatgccgcacgacctgatcaac
tccaagccgatctcggccgccatcaaggagttcttcggttcgagccagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttccgcactgggc
ccgggcggcctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccgacgcac
tacggccgcgtgtgcccgatcgagacgcccgaaggtccgaacatcggcctgatcaactcc
atggcgctgtacgctcgcctgaacgagtacggcttcctggaaacgccctatcgcaagatc
atcgacggcaaggtcagcgaccagatcgactacctgtcggccatcgaggaaagccactac
gtcatcgcgcaggccaacgccgcgctcgacgccgaaggccgtttcaccgacgacctggtg
gcctgccgcgaagcgggcgaaaccatgctgacctcgccggccaacgtgcactacatggac
gtggcgccgtcgcagatcgtgtcggtcgcggcctcgctcatcccgttcctcgagcacgat
gacgcgaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccctgcctgcgt
cccgagaagccgctggtcggcaccggcatcgagcgcaccgtcgcggtcgactccggcacc
accgtgcaggccctgcgcggcggcgtggtcgaccacgtcgacgccgagcgcgtggtgatc
cgcgtcaacgacgacgagaacgtcgccggcgaagtgggcgtggacatctacaacctcatc
aagtacacccgttccaaccagaacacgaacatcaaccagcgtcccatcgtccgccgcggc
gacgtggtggccaagggcgacgtgctggccgacggcgcgtccaccgatctgggcgagctc
gcgctgggccagaacatgctgatcgcgttcatgccctggaacggctacaacttcgaggac
tcgatcctgatctccgagaaggtcgtggccgatgaccgctacacctcgatccacatcgag
gaactgacggtcgtcgcgcgcgacaccaagctcggacccgaggaaatcacgcgcgacatc
agcaacctcgccgaaacccagctcaaccgtctggacgagtcgggcatcgtgtacatcggc
gcggaagtcggcgccgacgacgtgctggtgggcaaggtcacgcccaagggcgagacccag
ctgacccccgaagagaagctgctgcgcgccatcttcggcgagaaggcttccgacgtgaag
gacacctcgctgcgcgtgccctcgggcatggtcggcaccgtcatcgacgtgcaggtgttc
acccgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgacgaactgcgc
cgctatcgccaggacctcaacgaccagctgcgcatcgtcgagaacgaccagttcgaccgt
atcgagaagatgctggtcggcaagacggtcaacggcggcccgcgcaagctggccaagggc
gccgccatcaccaagccgtacctggccgacctggatcgctggcagtggttcgacatccgc
ctggccgatgaacagcacgccgtcgtgctggagcaggccaaggaatcgctcgagcagaag
cgccaccagttcgacctggccttcgaagagaagcgcaagaagctcacgcagggcgacgaa
ctgccgccgggcgtgctgaagatgatcaaggtctacctggccgtcaagcgccgcctgcag
cctggcgacaagatggccggccgccacggcaacaagggcgtggtgtcgcgcatcacgccg
gtggaagacatgccgcacatggccgacggcactcccgccgacatcgtgctgaacccgctg
ggcgtgccctcgcggatgaacgtcggccaggtgctggaagtgcacctgggctgggcggcc
aagggcgtgggctaccgcatcgccgacatgctgcgcgacgagcgcacggcgcaggtgaag
aacatccgcgcctacctcgaaaaggtctacaacacgaccggcatgggcgcgcgcatcgac
gagctgagcgatgaggaagtcatcgagatggcgcagaacctgaagaacggcgtgcccttc
gcgacgccggtcttcgacggcgccaccgaagaagaaatcacgcagatgctcgagctggcc
tatcccgacgaagtggccaagcgcatgcagctgacgccctcgcgcacgcaggcatggctg
ttcgacggccgcaccggcgagcagttcgagcgtccggtcaccatcgggtacatgcactac
ctgaagctgcaccacctggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcg
ctggtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggggaa
atggaagtgtgggccctggaagcctatggcgcgtcgtacacgctgcaggaaatgctgacg
gtgaagtccgacgacatcaccggccgtaccaaggtttacgaaaacatcgtcaagggcgat
cacgtcatcgatgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ctggccctggacatggatttggagcgtaactga
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integrated database retrieval system
