Bordetella holmesii 44057: D558_0195
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Entry
D558_0195 CDS
T03379
Symbol
serS
Name
(GenBank) serine--tRNA ligase
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
bhm
Bordetella holmesii 44057
Pathway
bhm00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
bhm00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
D558_0195 (serS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
bhm01007
]
D558_0195 (serS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bhm03016
]
D558_0195 (serS)
Enzymes [BR:
bhm01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
D558_0195 (serS)
Amino acid related enzymes [BR:
bhm01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
D558_0195 (serS)
Transfer RNA biogenesis [BR:
bhm03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
D558_0195 (serS)
Prokaryotic type
D558_0195 (serS)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
JIP_LZII
FapA
Cep57_MT_bd
Tropomyosin
Uso1_p115_C
Motif
Other DBs
NCBI-ProteinID:
AIT24889
LinkDB
All DBs
Position
complement(180050..181405)
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AA seq
451 aa
AA seq
DB search
MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQ
LKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGVSS
DENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMA
RLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPK
VDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTR
GMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAK
TYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALV
AVLENCQQADGSVRVPAVLQPYMGGLTVLEP
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgctagatccgatactgctgcgcaaagacctgcaaaccgtcgtcgaccgcctcaagagc
cgtggcgtcgatttcgacatcgcccggttcaacgagctggagtcccgccgcaaggccgtc
cagaccgaaaccgagtcgcagcaggcgcgccgcaatgccttggccaagcagatcggccag
ctcaagggcaaaggcgcacccgaagcggaagtgcaggccgtgatggccgagtcgcaggcc
ttgccggcccggctcaaggcgctcgaggacgaactggcgcagacgcaggcgcaactcaac
gacctgctgatgtccgtgcccaacctgccgcacgccagcgtgccgcagggcgtgtccagc
gacgagaacgtcgaggtgcggcgttggctgccgggcgcggccgacgagcgcggcatccct
gcggcgctgggtttcgaggtgcgggatcacgtggcggtgggcgagccgctgggcctggat
ttcgatctggccgcacggctgtcgggcgcgcgcttttctttcatgcgcggccagatggcg
cgcctgcaccgcgcgctggcgcagttcatgctggacttgcagacgggcacgcatggctac
accgagtgctacacgccctacatcgtcaacagctcgaccttgttcggcaccggccaactg
cccaagttcaaggacgacatgttcttcgtcaccaagggcggcggcgacgacgagcccaag
gtcgacgagcagggcaacccgctggcgcgcgaagaccaatacctgatctcgacctcggaa
atcaccctgaccagcgtggtgcgcgagaccatcgtggccggcgccgacctgccgctgcgc
ctgaccgcgcatacgccgtgcttccgctccgaagccggcagcggcgggcgcgatacgcgc
ggcatgatccgccagcaccagttcgacaaggtcgagatggtgcagatcgcccatcccgag
cattcgtacgaggcgctcgaggaaatggtcggccatgccgagcgcgtactgcagctgctg
gagctgccgtaccgcgtcatgctgctgtgcaccggcgacatgggtttcggctcggccaag
acctacgacctggaggtctggctgccggcgcaggatacctggcgcgagatctcctcggtt
tccaactgcgaaacattccaggcgcgccgcatgcaggcccgcttccgtaacgcgcagaac
aagcccgaatacgtgcatacgctcaatgggtccgggctggccgtgggccgcgccctggtg
gccgtgctggaaaactgccagcaagccgacggcagcgtgcgggtgccggccgtgctgcag
ccctacatgggcggcctgaccgttctcgaaccttga
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