Bordetella holmesii ATCC 51541: D560_3229
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Entry
D560_3229 CDS
T03052
Name
(GenBank) tRNA pseudouridine synthase family protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bho
Bordetella holmesii ATCC 51541
Brite
KEGG Orthology (KO) [BR:
bho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bho03016
]
D560_3229
Enzymes [BR:
bho01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
D560_3229
Transfer RNA biogenesis [BR:
bho03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
D560_3229
Prokaryotic type
D560_3229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AHV93712
LinkDB
All DBs
Position
3001955..3002542
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AA seq
195 aa
AA seq
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MGSGVNAFLPSSISVHWALEVPEDFHARFSARSRSYVYLLWRGRVRPALWAGRAGWCFQP
LDVAAMRQAAQTLLGEHDYSSFRSSQCQARHPVRTMSRLDIAECGDFLVFTLQANAFLHH
MVRNIMGALLQIGQGREPVAWMGHLLAVRDRRLGAPTFSPDGLYLSAVDYPRAFDLPQLD
GAGTFLAPFTSASQP
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
ttgggttcgggggtaaatgcctttctgccttccagcatatccgtgcactgggcgctggaa
gtacccgaggattttcatgcgcggttttctgctcgttcgcgcagctacgtctatctgctg
tggcgcggtagggttcgtccagcgttatgggcgggccgtgcagggtggtgcttccaacct
ctggatgttgccgccatgcgtcaggccgcgcaaaccctgctgggcgaacacgactactcc
agttttcgttcttcacaatgccaagcgagacacccggtgcgcaccatgagccggctggac
atcgccgagtgcggtgacttcctggtatttacgctgcaggcgaatgctttcttgcatcat
atggtacgtaacatcatgggggcgctgctccagatagggcaggggcgtgagccggtggcg
tggatgggccacctgctcgcagtgcgtgaccgacgccttggtgcgcccacattttctcca
gatggcctgtatctatctgctgtcgattatccgcgggcattcgatctgccgcagctcgat
ggcgcaggcacctttctagcgccgttcacttctgcctctcaaccttag
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