Borrelia hermsii DAH: BH0623
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Entry
BH0623 CDS
T00764
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bhr
Borrelia hermsii DAH
Pathway
bhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BH0623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhr03400
]
BH0623
Enzymes [BR:
bhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BH0623
DNA repair and recombination proteins [BR:
bhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BH0623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
TsaE
Motif
Other DBs
NCBI-ProteinID:
AAX17125
UniProt:
A0AA34R4C1
LinkDB
All DBs
Position
complement(657358..660726)
Genome browser
AA seq
1122 aa
AA seq
DB search
MNIEKELTTILNDNQNLKKIQQLIKENLPFTLVGHGGFFEAFLINKIKEYSGNNKIILIV
NNENIADALKDDLMQITDKIYELNYFSPLVYKGIGSKSTIFSERIKFLINFYENNPGIYI
VLLKSLLSKIPTKENLFKNIYKIQTSKLINIKNLESKLIRLGYEKTMRVTLPGEFTIKGE
IIDIHSFNKAEPIRISLHNDTIKEIKYFNPLTQLKKGNEISEFDIIPKKEIIWNNESINR
LKHYIKENEYKKLFEQIETKYHARAEEIFYPLIGDTYLSQEINEDTLTINFEIPNLQEEI
KKIYKEYEKLYSQAIESGEKTIAPKEIFINLNDLKLKTNIFFVKTPANTQTEELVEFEIE
SGRRFFSNIALAKEEIQNWLNNGFKVIIAAESSSQKEKLKYIFKDLPKIKIEVLKISSSL
IINKEKIAIILESDIFNRRQKINKVFESSRTKPIDSFIEVEKNSHVVHINHGIGIFKQIK
RIKTSLLEKDYIEIEYADNEKLFIPIEQTHLIQRYIGNENQNIKLDKISSKTWEKKKANA
KKRIDAIADQLVSLYSARESTKGFQYPQDNEWQLLFESEFAYDETPDQLTAISEIKQDMM
SLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGTKQVAILSPTTILAEQHFNTFKKRFKNFP
IKIAMMSRFIKKSKEREIIKNLATGEIDIIIGTHKILSKKIIYKNLGLIIIDEEQRFGVR
EKEKLKEIKVSVDCLTLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFSELL
IKHAIEHELSRDGQVFFVHHNIQELDLIKAMLEKVVPYARIATIHARLTGDQIENIMHDF
INKSYQVLLSTTIIENGIDIENANTIIINNANRFGLAQLYQLRGRVGRSSQKAFAYFLYK
ESSSLNESAIERLRAISEFSELGAGFQIAMKDMEIRGVGNLLGKEQHGEIESIGLDYYLT
MLNKAIEKRMGKNSKEDEITIEINYNGFIPDSYVNNEQDKISIYKKISAIQSEEENNKIR
AEIHDRFGSIPEELNTLLILSELKLLAKKLNITSLKEKNGLLEIEYLDIKSIPVYRIMQI
IKDDPTTLKINPKDKKSVFLNLKNVKESEKINCIYRHLNLLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagaaaaagaattaactaccatactaaatgacaatcaaaatttaaaaaaaata
caacaactcattaaagaaaatctaccctttacactagtagggcatgggggattttttgaa
gcttttttaataaacaaaataaaggaatatagcggtaataataaaattatattaatagtt
aacaatgaaaatattgcagatgcactcaaagatgacttaatgcaaattacagataaaata
tatgaacttaattatttcagtcctcttgtatataaaggcatcggctcaaaaagtacaatc
tttagcgaacgaataaaattcttaatcaatttttatgaaaataatcctggaatctatatt
gttttattaaaatccctacttagcaaaatacctacaaaagaaaatttatttaaaaatatt
tataagattcagacaagcaagttaataaacataaaaaatcttgaaagcaaacttataaga
ctaggctatgaaaaaacaatgagagttacattacctggagaatttacaataaagggtgaa
ataatagacatacactcatttaataaggcagaaccaataagaatttcactgcataatgac
acaataaaagaaatcaaatattttaatcccttaactcaattaaaaaaaggcaatgaaatc
tccgaatttgatataattcctaaaaaggaaatcatttggaataatgaaagcataaacaga
ttaaaacactacataaaagaaaatgaatataaaaaattatttgaacaaattgaaacaaaa
tatcatgcaagagcagaagaaatattttatccgttaataggagacacatacctaagtcaa
gaaataaatgaagatacgcttactataaatttcgaaataccaaatttacaagaagagatc
aaaaagatctataaagagtatgaaaaactttatagccaagcaatagagtcaggagagaaa
acaattgcaccaaaagaaatttttataaatttgaatgatttaaaattaaaaactaatatt
ttcttcgtcaaaactcctgcaaatacacaaacagaagaacttgtagaatttgaaattgaa
agtgggcgtagatttttttcaaacattgcacttgcaaaggaagaaatacaaaactggcta
aataacggatttaaagtaattattgcggcagaatctagttcacaaaaagaaaaattaaaa
tacatcttcaaagatctgccaaaaatcaaaattgaagttttaaaaatatcaagctcactt
ataataaacaaagaaaaaatagccattatccttgaatcagatatatttaacagaagacaa
aaaataaataaagttttcgaatcatcaagaacaaaacctattgattcatttattgaagtt
gaaaaaaatagtcatgtagttcacatcaaccatggaattggaatatttaagcaaatcaaa
agaatcaaaacaagtcttcttgaaaaagattatattgaaattgaatatgcagataatgaa
aaattatttattccaattgagcaaacacaccttatccaaaggtatattggaaatgaaaat
caaaatataaaattagataaaatcagctcaaaaacctgggaaaagaaaaaagctaatgca
aagaaaagaattgatgcaattgccgaccagcttgtttcactctattcagcaagagaaagc
actaagggatttcaatatcctcaagataatgaatggcaattattatttgaatcagaattt
gcatatgatgaaaccccagatcaactaacagcaatatcagaaatcaaacaagatatgatg
agcttaaaagtaatggatagacttttatgcggtgatgttggatttggtaaaaccgaagtc
gcaatgagggctgcattcaaagctgtcatgggaacaaaacaggtagcaatactctcccca
accacaattcttgcagaacaacatttcaatacatttaagaaaagatttaaaaactttcca
attaaaattgcaatgatgagtagatttataaaaaaatcaaaagaaagggaaattattaaa
aacttagcaacgggcgaaattgacataataattggaacacacaaaatactctctaagaaa
ataatatataaaaacttaggactcattataatcgacgaggaacaaagattcggggtaaga
gaaaaagagaaactaaaagaaataaaagtctctgttgactgtcttaccctatcagcaact
ccaattccgcgatctcttcatatgtcattaattaaactaagagacatttcagttttaaaa
actccaccccaaaacagaatcaaaatagaaacttatgtagaagaatttagcgagcttttg
attaaacacgcaatagagcatgaactctcccgagacggacaagtattttttgtgcatcat
aatattcaagaattagatttaataaaagcaatgctagagaaagtagtcccttacgcaaga
attgcaactattcatgcaaggcttacaggtgaccaaattgaaaatatcatgcatgatttt
ataaataaatcatatcaggtactactatcaacaacaataattgaaaacggaatagatatt
gaaaatgcaaatacaataataattaacaatgcaaacagattcggacttgcacaactatac
caactaaggggcagggttggcagaagttcacagaaagccttcgcttatttcttatataaa
gaaagctcaagcttaaacgaaagtgctattgaaagattaagggcaatatctgaattttca
gaacttggagcaggatttcaaattgcaatgaaagacatggaaataagaggtgttgggaac
ctacttgggaaagaacaacatggagagatcgaatctattggactggattactacttaaca
atgttaaataaagcgattgaaaagcgaatgggaaaaaattctaaggaagatgaaatcact
attgaaatcaactacaatggattcattcccgatagctatgtaaataatgaacaagacaaa
atatcaatttacaaaaaaatttcagcaattcaaagcgaggaagaaaataacaaaataaga
gctgaaattcatgaccgatttggctcaattccagaagagcttaacaccttacttatatta
tcagaactgaaactacttgccaaaaaactcaatattacaagccttaaagaaaaaaatggg
ttacttgaaatcgaatatttagatataaagagtattcctgtttacaggataatgcaaatc
ataaaagatgatcctactacattgaaaataaatccaaaagataaaaaatcagtttttcta
aacctaaaaaatgttaaagaatcagaaaaaataaactgcatatatagacatttgaatcta
ttattataa
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