KEGG   Bisgaardia hudsonensis: A6A11_01165
Entry
A6A11_01165       CDS       T06663                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bhud  Bisgaardia hudsonensis
Pathway
bhud03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bhud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A6A11_01165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bhud03021]
    A6A11_01165
   03400 DNA repair and recombination proteins [BR:bhud03400]
    A6A11_01165
Enzymes [BR:bhud01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A6A11_01165
Transcription machinery [BR:bhud03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A6A11_01165
DNA repair and recombination proteins [BR:bhud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A6A11_01165
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 SPG4
Other DBs
NCBI-ProteinID: QLB12320
LinkDB
Position
238337..242365
AA seq 1342 aa
MVYSYTEKKRIRKSFGKRPQVLNVPYLLTIQLDSFDKFIQRDPDGEQGLEAAFRSVFPIV
SNNGSTELQYVSYQLGEPVFDVRECQIRGITYAAPLRVKLRLISYDRDAAPGTIKDIKEQ
EVYMGEIPLMTNNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALNYTTEEILNIFFEKVEFNIQDNKLLMT
LVPERLRGETASFDIEANGTVYVERGRRITARHVKALAKDKISQVEVPTEYIVGKVSAKD
YVDLDTGEIICPANMEISLELLAKLSSAGYKKIETLFTNDLDSGPYISETLRVDPSTDRL
SALVEIYRMMRPGEPPTKEAAENLFDNLFFSSDRYDLSAVGRMKFNRSLGIEETTGSGIL
SNDDIVNVMKKLIDIRNGHGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHATHYGRVCPIETPEGPNIGLINSLSVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYVIAQANSNLDENFRFTDAFVTARGEHGESGLYRPDEIHYMDVSTQQ
IVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVALDSGVAVVAK
RGGTIQYVDASRIVVKVNEDETIAGEAGIDIYNLIKYTRSNQNTCINQIPCVELGEPIER
GEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LVEELEILEAGLFARVRNLLVAGGLSESHLDSLNRKQWLELTLVDEAQQTQLEQLAEQYE
ELRKDFEHKLEVQRGKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQKQDVE
KLRGYIQKAYDLGQGEQVVDLNTFTDEEVMRLAENLRKGMPLATPVFDGADESEIKGLLE
LGGLPTSGQITLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVGGTHQMDPGTP
ESFNVIMKEIRSLGLNIDLDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcatataccgagaaaaaacgaattcgtaaaagcttcggcaaacgtccgcaa
gttttaaatgtaccttatttattaactattcaacttgactcttttgataaatttattcaa
agagatcccgatggtgagcaaggtttagaagccgctttccgttctgtatttcctattgta
agtaataatggaagtacagagttacaatatgtaagttatcaattaggtgaacctgtattt
gatgttagagaatgtcaaatccgaggtattacttatgctgcaccattacgtgtaaaacta
agattaattagttacgatagagatgcagcacctggcacaattaaagatataaaagaacaa
gaagtatatatgggagaaatcccattaatgacaaataatggaacctttgttattaatgga
acagaacgtgttattgtttctcaactacatcgtagtccaggcgtattctttgatagcgac
aaaggaaaaactcattcatctggaaaggttttatataatgcgcgtattattccttatcgt
ggatcgtggttagattttgaatttgatccgaaagataatttatttgctcgtattgaccgt
cgtcgtaaattacccgcaacaattattcttagagcattaaattatactactgaagaaatt
ttaaatattttctttgaaaaagtggaatttaatattcaagacaataaattattaatgact
ttagtacctgaacgcttgagaggtgaaaccgcatcttttgatattgaagcgaatgggaca
gtctatgttgaacgtggtcgccgaataacagctagacatgtaaaagcattagcaaaagat
aaaatatctcaagtagaagtgcctactgaatatatcgttggaaaagtttctgcgaaagat
tatgttgatcttgataccggcgaaattatttgccctgcgaatatggaaatttctttagaa
ttactcgcaaaattatccagtgcaggctataaaaaaatagaaactttatttactaatgat
ttggattcaggcccttatatttcagaaacattaagagttgatccatctaccgatcgtttg
agtgccttggttgaaatttatcgaatgatgcgtccaggtgaaccaccaacaaaagaggca
gcagaaaatttatttgataatctgtttttctcttctgatcgttatgatttatctgcagta
ggtcgaatgaagtttaatcgttctttaggtattgaagaaacgacaggtagcggtatttta
agtaatgatgatatcgtcaatgtaatgaaaaaattgattgatattcgtaatggtcacggg
gaagttgatgatattgaccatttaggaaatcgtcgtattcgttctgttggtgaaatggct
gaaaaccaattccgcattggattagtacgagttgaacgtgcagtaaaagaacgtttatcc
ttgggcgatcttgatgcagtaacaccgcaagatttaattaacgctaagccgatttcagcc
gcagttaaagaattttttggttcatcacaactttctcagtttatggatcaaaataaccct
ttatcagaagtaacacataaacgtcgtatttcagcattaggtccaggtggtttaactcga
gaaagagctggttttgaagttcgagatgttcatgcaactcattatggacgtgtttgtcca
atcgaaacgcctgaaggtccaaatatcggtttgattaactcattatctgtgtacgcacgc
actaatgattacggtttcttagaaactccatatcgaaaagtagttaatggacaagtgaca
gaagaaattgaatatttatctgctattgaagaaggtaaatatgttattgctcaggctaac
tcaaaccttgatgagaatttccgttttactgatgcatttgttactgctcgtggggaacac
ggcgaatcaggtttatatcgtcctgatgaaattcattatatggatgtatcaactcaacaa
atagtttctgtcgcagcagcgttaattccattcttagaacatgatgatgcaaaccgtgcc
ttgatgggtgcaaacatgcaacgtcaagcggttcctacattacgagctgataagccactt
gttggtactggaatggaaaaacctgttgcattggattctggtgttgccgttgtagcaaaa
cgtggtggtacaatccaatatgtagatgcttctcgtatcgttgttaaagtgaacgaagat
gaaactattgctggtgaagcgggtattgatatttataatttaataaaatacactcgatct
aaccaaaatacttgtattaatcaaattccttgtgttgaactcggcgaaccaattgagcga
ggtgaaattcttgctgatggtccatcaacagatctgggcgagctagctcttggtcagaat
atgcgtgttgcatttatgccttggaatggttataactttgaagattctatgttagtgtct
gaaagagtagttcaagaagatcgtttcactactattcatattcaagaactttcttgcgtt
gctcgtgatactaaattaggttcagaagaaattacagcagatattccaaatgttggtgaa
tctgcattaagtaaacttgatgaatcggggattgtttatatcggtgctgaagttaaaggt
ggcgatattcttgttggtaaagttacgccaaaaggtgaaacacaattaacgccagaagag
aagttgttacgtgccatttttggtgaaaaagcctctgatgttaaagattcttcattgcga
gttcctaatagtgtttctggtaccgttatcgatgttcaagtatttactcgtgatggagta
gaaaaagataaacgagcattagaaattgaagaaatgcaacttaagcaagccaagaaagat
ttagttgaagaactagaaattttagaagctggtctatttgctcgtgttcgtaatttattg
gttgcaggtggtttatctgagtcacatttagacagtttaaatcgtaagcaatggttagag
ttaactttagttgatgaagctcaacaaacgcagttagagcaacttgcagagcaatatgaa
gaactacgtaaggactttgaacataaattagaagtgcaacgtggtaagattatccaaggt
gatgatttagcaccaggtgtcttaaaaatcgttaaagtttatcttgcggttaaacgtcgt
attcaaccaggtgataaaatggctggtcgtcatggtaacaaaggggttatttcaaaaata
aatccagttgaagatatgccatacgatgaaaatggtcaacctgttgatattgtattgaat
ccattgggggttccttctcgaatgaatattggtcagattctagaaactcacttaggtttg
gctgctaaagggattggtgatcaaatcaatgcgatgatcaaacaaaaacaagatgttgaa
aaattgcgaggctatattcagaaagcttatgatttaggtcaaggagaacaagttgttgat
ttaaatacctttactgatgaagaagtaatgcgtttagcagagaatttacgtaaaggtatg
cctttagcaacacctgtatttgatggtgcagatgaaagtgagattaaaggattattagaa
cttggtggcttaccgacctctggacaaattacattatatgatggacgaacaggggaacaa
tttgagcgtcctgttactgttggttatatgtatatgcttaagttaaatcacttagttgat
gataaaatgcatgcacgttcaacggggtcttatagtcttgttactcaacagcctttgggt
ggtaaagctcaatttggtggtcaacgtttcggtgagatggaggtatgggcattagaagcc
tatggtgcagcttatactttacaagaaatgttaactgtgaaatcagatgatgtgaatggt
cgtactaaaatgtataaaaatattgtaggcggcacgcatcaaatggatcctggtacacca
gaatctttcaatgtaattatgaaagaaattcgttcattaggtcttaatattgatctagac
gaagagtaa

DBGET integrated database retrieval system