Brachyspira hyodysenteriae WA1: BHWA1_00659
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Entry
BHWA1_00659 CDS
T00865
Symbol
vacB
Name
(GenBank) VacB, Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bhy
Brachyspira hyodysenteriae WA1
Pathway
bhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHWA1_00659 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhy03019
]
BHWA1_00659 (vacB)
03016 Transfer RNA biogenesis [BR:
bhy03016
]
BHWA1_00659 (vacB)
Enzymes [BR:
bhy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BHWA1_00659 (vacB)
Messenger RNA biogenesis [BR:
bhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BHWA1_00659 (vacB)
Transfer RNA biogenesis [BR:
bhy03016
]
Prokaryotic type
tRNA degradation factors
BHWA1_00659 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
Motif
Other DBs
NCBI-ProteinID:
ACN83155
UniProt:
A0A3B6V8Q8
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All DBs
Position
788574..790559
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AA seq
661 aa
AA seq
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MKVIKLLKRINKEKELDISEYKNKYVETKKDKLRFDKMLKKSVSMGLVMKKSNTLKLTNE
GKVYLERELKQITEKEKDILRDRKSKSKDKKGDKGGKKTSIPKPEIKVDINNAKKDAEII
AKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGADSKDFDDAISIE
KLNDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLNEG
VSRFTMTVFVTIDNKGNVKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLVELLKNA
DDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEELMLIANCEV
AKRLKNIKGSIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDADGNLDFHSFIESIMGKPDE
KLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQSLEGVNNL
KPTMQQFYTNSAQWCSKTERIAVECERSLDKVKAARFMKDKVGNEYNGIVSGITNFGMFV
EIEDRGIEGLIRYATLKSHYRYDEHEQAAYSEEDAKWYTLGDRIRIVVYKVDVKELFIDF
IPASEFDNSFDDNDIIDSRDFLKKKKNKKEIYSKKSHKKRSSRDRTDRKDKKHRKKSKKR
R
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttataaaattgctaaaaagaataaataaagaaaaagaattagatatatcagaa
tacaaaaataaatatgtagaaactaaaaaagataaacttcgttttgataaaatgcttaaa
aagtctgtttcaatgggacttgtaatgaaaaaatctaatactttaaaacttacaaatgaa
ggaaaagtatatttagaaagagagttaaaacaaataacagagaaagaaaaagatatatta
agagatagaaaatcaaaatctaaagataaaaaaggtgataaaggcggtaaaaaaacaagc
atacctaaaccagaaataaaagtcgatattaacaatgctaagaaagatgctgagataata
gcaaaagcatataatgtacctactgaattcccaaaaaaatgtattgaagaagctaagcta
ttaccagacagtatggaaaatgtagaattagaattcgacagaatagatttaagagatata
agaactgtaacaatagacggagcagattcaaaagattttgacgatgctataagtatagaa
aaattaaatgactgttataaattaggcatacatattgctgatgtaagtcattttgtagtt
atgggaagtgctttagacagagaggcaagaaagagaggaaacagcgtttatttaattgat
actgtttatcctatgtttccacatgagctttcaaatggaatatgttctttaaatgaaggc
gtaagcagattcacaatgacagtattcgtaacaatagacaataaaggtaatgtaaaagaa
agtacttttcataaaagtgttataaaatcaagcagaagattaacttatgattatgcccag
gatgttttggacggtatagaacaagatgaagattggcttgtagaattattaaagaatgct
gatgatgtaaaaaagatacttcttcaaaaaagaatagacaatggaagcatagagtttaat
cttaatgaaactcaaataatattggataaaggcggaaatcctaaagactttttcattggc
gagagaaaagaaacacataaaataatagaagagttaatgcttattgctaactgcgaagta
gctaagagattaaaaaatataaaaggctctatatacagagtacatgatagtccggatcaa
gaaaagctagacacattcacaagaatagcatttaacagaggatatagacttacaagagat
gcagacggtaatttggattttcattcatttatagaatctataatgggaaagccggacgaa
aaattactacttaccctactcttacgttctatgaagcaggctatatacgatgttaataat
atagggcatttcggattaggttttgaatattatactcattttacttcacctataagaaga
tacacagacttacttactcatagacttttaaaacagtcattagagggagtaaataattta
aaacctactatgcaacagttttatactaattcagctcaatggtgttcaaagactgaaaga
atagcagttgaatgcgagagaagtttggataaagtaaaagcggcaagatttatgaaagac
aaagtaggaaatgaatataacggaatagtaagcggcattacaaattttggtatgttcgtt
gaaatagaagacagaggaatagaaggattaataagatatgcaactttaaaatcacattac
agatacgatgaacatgaacaggcagcctacagcgaagaagatgctaaatggtacacgttg
ggagatagaataagaatagtagtttataaagttgatgtaaaagaattattcattgacttc
ataccagcaagcgaatttgataatagttttgatgacaacgatataatagacagcagagat
tttttgaagaaaaagaaaaacaaaaaagaaatatattcaaaaaaatctcataaaaaaaga
agttcaagagatagaactgacagaaaagataaaaaacatagaaaaaaatcaaaaaagaga
agataa
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