KEGG   Brachyspira hyodysenteriae WA1: BHWA1_00659
Entry
BHWA1_00659       CDS       T00865                                 
Symbol
vacB
Name
(GenBank) VacB, Exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bhy  Brachyspira hyodysenteriae WA1
Pathway
bhy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bhy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BHWA1_00659 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bhy03019]
    BHWA1_00659 (vacB)
   03016 Transfer RNA biogenesis [BR:bhy03016]
    BHWA1_00659 (vacB)
Enzymes [BR:bhy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BHWA1_00659 (vacB)
Messenger RNA biogenesis [BR:bhy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BHWA1_00659 (vacB)
Transfer RNA biogenesis [BR:bhy03016]
 Prokaryotic type
  tRNA degradation factors
   BHWA1_00659 (vacB)
SSDB
Motif
Pfam: RNB S1
Other DBs
NCBI-ProteinID: ACN83155
UniProt: A0A3B6V8Q8
LinkDB
Position
788574..790559
AA seq 661 aa
MKVIKLLKRINKEKELDISEYKNKYVETKKDKLRFDKMLKKSVSMGLVMKKSNTLKLTNE
GKVYLERELKQITEKEKDILRDRKSKSKDKKGDKGGKKTSIPKPEIKVDINNAKKDAEII
AKAYNVPTEFPKKCIEEAKLLPDSMENVELEFDRIDLRDIRTVTIDGADSKDFDDAISIE
KLNDCYKLGIHIADVSHFVVMGSALDREARKRGNSVYLIDTVYPMFPHELSNGICSLNEG
VSRFTMTVFVTIDNKGNVKESTFHKSVIKSSRRLTYDYAQDVLDGIEQDEDWLVELLKNA
DDVKKILLQKRIDNGSIEFNLNETQIILDKGGNPKDFFIGERKETHKIIEELMLIANCEV
AKRLKNIKGSIYRVHDSPDQEKLDTFTRIAFNRGYRLTRDADGNLDFHSFIESIMGKPDE
KLLLTLLLRSMKQAIYDVNNIGHFGLGFEYYTHFTSPIRRYTDLLTHRLLKQSLEGVNNL
KPTMQQFYTNSAQWCSKTERIAVECERSLDKVKAARFMKDKVGNEYNGIVSGITNFGMFV
EIEDRGIEGLIRYATLKSHYRYDEHEQAAYSEEDAKWYTLGDRIRIVVYKVDVKELFIDF
IPASEFDNSFDDNDIIDSRDFLKKKKNKKEIYSKKSHKKRSSRDRTDRKDKKHRKKSKKR
R
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgaaagttataaaattgctaaaaagaataaataaagaaaaagaattagatatatcagaa
tacaaaaataaatatgtagaaactaaaaaagataaacttcgttttgataaaatgcttaaa
aagtctgtttcaatgggacttgtaatgaaaaaatctaatactttaaaacttacaaatgaa
ggaaaagtatatttagaaagagagttaaaacaaataacagagaaagaaaaagatatatta
agagatagaaaatcaaaatctaaagataaaaaaggtgataaaggcggtaaaaaaacaagc
atacctaaaccagaaataaaagtcgatattaacaatgctaagaaagatgctgagataata
gcaaaagcatataatgtacctactgaattcccaaaaaaatgtattgaagaagctaagcta
ttaccagacagtatggaaaatgtagaattagaattcgacagaatagatttaagagatata
agaactgtaacaatagacggagcagattcaaaagattttgacgatgctataagtatagaa
aaattaaatgactgttataaattaggcatacatattgctgatgtaagtcattttgtagtt
atgggaagtgctttagacagagaggcaagaaagagaggaaacagcgtttatttaattgat
actgtttatcctatgtttccacatgagctttcaaatggaatatgttctttaaatgaaggc
gtaagcagattcacaatgacagtattcgtaacaatagacaataaaggtaatgtaaaagaa
agtacttttcataaaagtgttataaaatcaagcagaagattaacttatgattatgcccag
gatgttttggacggtatagaacaagatgaagattggcttgtagaattattaaagaatgct
gatgatgtaaaaaagatacttcttcaaaaaagaatagacaatggaagcatagagtttaat
cttaatgaaactcaaataatattggataaaggcggaaatcctaaagactttttcattggc
gagagaaaagaaacacataaaataatagaagagttaatgcttattgctaactgcgaagta
gctaagagattaaaaaatataaaaggctctatatacagagtacatgatagtccggatcaa
gaaaagctagacacattcacaagaatagcatttaacagaggatatagacttacaagagat
gcagacggtaatttggattttcattcatttatagaatctataatgggaaagccggacgaa
aaattactacttaccctactcttacgttctatgaagcaggctatatacgatgttaataat
atagggcatttcggattaggttttgaatattatactcattttacttcacctataagaaga
tacacagacttacttactcatagacttttaaaacagtcattagagggagtaaataattta
aaacctactatgcaacagttttatactaattcagctcaatggtgttcaaagactgaaaga
atagcagttgaatgcgagagaagtttggataaagtaaaagcggcaagatttatgaaagac
aaagtaggaaatgaatataacggaatagtaagcggcattacaaattttggtatgttcgtt
gaaatagaagacagaggaatagaaggattaataagatatgcaactttaaaatcacattac
agatacgatgaacatgaacaggcagcctacagcgaagaagatgctaaatggtacacgttg
ggagatagaataagaatagtagtttataaagttgatgtaaaagaattattcattgacttc
ataccagcaagcgaatttgataatagttttgatgacaacgatataatagacagcagagat
tttttgaagaaaaagaaaaacaaaaaagaaatatattcaaaaaaatctcataaaaaaaga
agttcaagagatagaactgacagaaaagataaaaaacatagaaaaaaatcaaaaaagaga
agataa

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