Bradyrhizobium icense: LMTR13_06580
Help
Entry
LMTR13_06580 CDS
T04485
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bic
Bradyrhizobium icense
Pathway
bic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LMTR13_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bic03400
]
LMTR13_06580
Enzymes [BR:
bic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LMTR13_06580
DNA repair and recombination proteins [BR:
bic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LMTR13_06580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANW05352
UniProt:
A0A1B1URC7
LinkDB
All DBs
Position
1381281..1383953
Genome browser
AA seq
890 aa
AA seq
DB search
MALKKLSTYRKKRDFGKTAEPSGDVKVAPARERRFVIQKHDASRLHYDLRLEFDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVMLWDRGYWVSDDPDRGF
KKGDLKFTLHGGKLHGSWVLVRMKGDRYGGKRTNWLLIKHRDEFVKEGEANDILDEDRSV
ASGRTMEQIAQGKGRAPKPFMLARKTKADAVWQSNRGDAAEARISRKTAALRAAPEIKTR
APAPTVRPKKVAAMPDFVAPQLCTVVERPPGGEGWCHEIKFDGYRVQLRVEGGDAVLYTR
KGLDWTDKFKAIAEEATSLPDVLIDGEIVALDHNGAPNFSTLQAALSDGDSESLIFYAFD
LLFAGGEDLRKLPLDDRKARLKKLLATQKGKDKQIRYVEHFESGGAAVLQSACKLELEGI
VSKKLNGPYRSGRTESWTKAKCRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGMVG
TGFGQDKVRRIMPALKAAASDKSPFGGKNAPKKARDVHWLKPELVAEIEFAGFTADGNIR
QAAFKGLRQDKPAEEVEAETPSTSGVAQPKPGKAAKAATKTRSARPAADKAAEVMGVVIS
KPDKEMWPDAGDGEPVTKLDLAKYFEAVGEWMIGHLKGRPCSIVRAPDGIHGEKFFQRHA
MQGMSNLLDLANVSGDRKPYVQIDRVEGLAAVAQIGGLELHPWNCAPNAYDTPGRLVFDL
DPAPDVEFAEVIEAAKDMRQRLTAVGLESFCKTTGGKGLHVVTPLLHGARDKVSWKEAKA
FAQGICQWMANDDPERYLLNMSKKLRKRKIFLDYLRNDRMSTAVAALSPRAREGATVSMP
LTWTQVRGDLDPKKYTIRTVPGLLSRTKAWDGYDDAAASIKPAIKKLAAK
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
gtggcgttgaagaaactcagcacgtaccgcaagaagcgcgatttcggcaaaacggcggag
ccttccggcgacgtcaaggtcgcgccggcccgagagcggcggttcgtgattcagaagcat
gacgcaagccggctgcattacgatctcaggctggaattcgacggcgtgttcaaatcctgg
gccgtcaccaaggggccgtcgctggatccccacgacaagcggctggcggtcgaggtagag
gaccatccgctggactacggcgatttcgaaggcaccattccggaagaccaatacggcggc
ggcacggtgatgctgtgggatcgcggctattgggtatcagatgatcccgaccgcggcttc
aagaagggcgacctgaaattcaccctgcatggcggcaagctgcatggaagctgggtgctg
gtgcggatgaaaggcgatcgctatggcggcaagcgcaccaactggctcctgatcaagcac
agagacgaattcgtaaaagaaggggaagccaacgacatcctggatgaggaccgttcggtc
gcgtcgggccgcacgatggagcagatcgcgcaaggcaagggcagggcgccgaagccgttc
atgctggccaggaagacgaaggctgacgcggtctggcagtcgaaccgtggcgacgcggcc
gaagcgcggatctcgcggaagacggccgccttgcgggccgcgccggagatcaagacgcgc
gcaccggcgccaacagtcaggccgaagaaagtcgcagcgatgccggatttcgtggcgccg
cagctttgcacggtggtcgagaggccgccgggcggcgagggctggtgccacgagatcaag
tttgacggctaccgcgtgcaattgcgggtcgagggcggcgatgccgtgctctatacccga
aaaggcctcgactggaccgacaagttcaaggcgatcgccgaggaagcgacatcgcttccc
gacgtgctgatcgacggcgagatcgtcgcgcttgatcataacggggcgcccaacttctcc
accctgcaggcggcgctgtcggacggcgacagcgaaagcctgatcttctatgcgttcgac
ctgttgtttgccggcggcgaggatctgcgcaagctgccgctcgacgaccgcaaggcgcgg
ctgaagaaattgctggcgacgcagaagggcaaggacaagcagatccgttatgtcgagcat
ttcgaaagcggcggcgctgccgtgctgcagtcggcctgcaagctcgaactggaagggatc
gtctccaagaagctcaacgggccctatcgctccggccgcacggaaagctggaccaaggcc
aaatgccgcgcgggacatgaggtggtgctgggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtctatcgcggcgatcatctcgcctttgtcggcatggtcggt
accggtttcgggcaggacaaggtgcgccgcatcatgccggcgctgaaggcggcagcctcc
gacaagagcccgtttggcggcaagaacgcgccgaagaaagcccgcgacgtgcattggctg
aagcccgagctggtcgccgagatcgaattcgcggggttcaccgcggatggaaatatccgt
caggccgcgttcaagggcctgcggcaggacaagccggccgaggaggtagaggcagagacc
ccgtccacgtcaggcgtcgcgcagccgaagccgggaaaagcagcaaaagcggcgaccaag
accaggagcgcgcggcccgcagccgacaaagccgccgaagtcatgggcgtggtgatctcg
aagccggacaaggagatgtggcccgatgccggcgacggcgagccggtgaccaagctcgat
ctcgcgaaatatttcgaggccgtcggcgaatggatgatcggccatctcaaaggccgccct
tgctccatcgtgcgcgcgcccgacggcatccatggcgagaaattcttccagcggcacgcc
atgcagggcatgtccaacctgctggatctggccaacgtctcgggcgaccgcaagccctat
gtgcagatcgaccgtgtcgagggattggcagcggtggcgcagatcggcgggctggagctg
catccctggaattgcgcgcccaatgcctacgatacgccgggccggttggtgttcgacctc
gatcccgctccggatgtcgaatttgcggaagtgatcgaggcggcaaaagacatgcgccag
cggttgaccgccgttggcctcgaaagcttctgcaagaccaccggcggcaaggggctgcac
gtggtgacgccgctgcttcatggcgcaagagacaaggtctcgtggaaggaggccaaagcg
ttcgcgcaaggcatctgccagtggatggcgaacgatgatcccgagcgctatctgctcaac
atgtcgaagaagctgcgcaagagaaagatcttcctcgactatcttcgtaacgaccggatg
tcgaccgcggtcgccgcactgtcgccgcgtgctcgcgagggcgccaccgtctcgatgccg
ctgacctggacgcaggtgcgcggcgatctcgatccgaagaagtacacgatccgcacggtg
ccggggctgctgagcaggacgaaagcgtgggacggctacgatgacgcggcggcgtcgatc
aagccggcgatcaagaagttggcggcgaagtag
DBGET
integrated database retrieval system
