Bifidobacterium indicum: BINDI_0286
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Entry
BINDI_0286 CDS
T03564
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bii
Bifidobacterium indicum
Pathway
bii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BINDI_0286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bii03021
]
BINDI_0286
03400 DNA repair and recombination proteins [BR:
bii03400
]
BINDI_0286
Enzymes [BR:
bii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BINDI_0286
Transcription machinery [BR:
bii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BINDI_0286
DNA repair and recombination proteins [BR:
bii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BINDI_0286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FadA
Pentapeptide
Motif
Other DBs
NCBI-ProteinID:
AIC91571
UniProt:
A0A087VTB9
LinkDB
All DBs
Position
434976..439103
Genome browser
AA seq
1375 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHNDMPDLQDEFDTEVSRLEQKRDLEIDKRAKKLEED
LAELEKSDEAKGSLKSRLRNGAERDMTSIRKRYDDQIQRISAVFDRFKALKPGDMEGDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQDFDLEAAAKELRNEIDTGSGQRKARALKRLKVV
SAFLNTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLADMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYYLTSAIEGAKGQG
RIFSSLAEARMALDLGEIDMQAKILLRVPEDFVMPKDWEPGELKVVDPEPGSPDVVKEEV
FKDGSKLFATNYGRVLFNETLPVDYPYINEQVAKGKLAGIVDDIATRYSTAQVAATLDAL
KDLGFTRAQWSGVTMAFSDIVVPPERTDIVDDYQRQTAKVNSQYDMGLLTDEERRQELIN
LWTECTDKVADAMQEHFTPGNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LAMKVAERDDQGNLVLVKAADGGPYSRLLADDVIDPADGKTVLYKRGDALSMDALRDMVA
HGVEEVKARSVLTCESTRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGTVKVEDTDRGRQVTLTPDDSS
VEALTYPVTRRAPMLVKDGQHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTDLLPGELVDQSRFKSANMKAVKAGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYHNATVEPDKAIRDTIYPNFGLGGDDVDLSDADLNDVDFSNIDFGDLKLGDDFNPDD
FLNDHGGQSHLGSGHGDITGQSLDESGIGQTDGQDAAGDQGTEATFSSSDQDSDQ
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaatgcatttgacaaactgagaatcggactggccaccgccgacgacatc
cgcggttggagctatggcgaggtcaagaagcccgagaccatcaattaccgtaccttgaag
cccgagaaggacggcctgttcggcgagcagatcttcggacccacacgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcggttcaagggaatcgtctgcgagcgatgcggtgtc
gaggtaacccgttcgcgcgttcgccgtgaacgcatgggccacatcgaattggccgccccc
gtcacccacatctggttcttcaagggtgtgccctcccgactgggatacctcctggacatc
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccagtgtggat
gaggagcagcgtcacaacgacatgcccgaccttcaggacgagttcgataccgaggtgagc
cgtctggagcagaagcgcgacctcgagatcgacaagcgcgccaagaagctggaagaggat
ctggccgaactggagaagtccgacgaggccaagggttccctgaagtcccgcctgcgtaat
ggtgcagagcgcgacatgacctccatccgcaagcggtatgacgaccagattcagcggatc
tccgccgtcttcgaccgcttcaaggccctcaagcctggcgatatggaaggcgatgtggac
ctgtggcgtgagatgcaggaccgctacggtgactacttcgacggttgcatgggagccgag
gccatcaagaagcgcctgcaggacttcgacctggaggccgcggccaaggagctgcgcaac
gagatcgacaccggttcaggccagcgcaaggccagggccctcaagcggctcaaggtggtc
tccgccttcctgaacaccggcaacaagcccgaagccatggttctggatgtcatcccggtc
attcctcccgacctgcgccccatggtgcagttggacggtggccgtttcgccacctccgat
ctgaacgacctctatcgtcgtgtgatcaaccgtaacaacaggttgaagaggctgatcgaa
ctgggcgcccccgagatcatgctcaacaacgagaagcgcatgctccaggaggccgttgac
tccctcttcgacaacggtcgtcgaggacgtccggttaccggtgcatccaaccgtcctctc
aagtccctggcagatatgctcaagggcaagcagggacgcttccgtcagaacctgctgggt
aagcgtgtggattactccggtcgttccgtgattgtggtcggcccctccctgcgtatgcac
cagtgcggtctgcccaagcccatggccctggagctcttcaagcccttcgtgatcaagcgc
ctggtggatctgaactatgcgcagaacatgaagagcgccaagcgtctggtcgaccgcggc
gatgccgaggtctggggcgtcctggaagaggtcatcgccgaacatcccgttctgctcaac
cgtgcacctacgctgcaccgtctgggcatccaggcattcgagcccatcctggtcgagggc
aaggccatccacctgcccccgctggcctgcgcggccttcaacgccgacttcgacggcgac
cagatggcggtccacctgcccctgtcggcagaggcccaggccgaggcacgttcgctcatg
ctggcctcagacaacatcctcaagccggctgacggacacacggtcaccatgccctcccag
gacatgattctgggtctgtactacctgacgtccgccattgagggggccaagggtcagggt
cgaatcttctccagcctggccgaggcccgtatggcccttgacctgggtgagatcgacatg
caggccaagatcctgctccgcgtgcccgaggacttcgtcatgcccaaggattgggagccc
ggcgagctcaaggtcgtcgaccccgagcccggcagccccgatgtggtcaaggaagaggtc
ttcaaggacggttccaagctcttcgccaccaactacggacgtgtcctgttcaatgagacc
ctgcccgtggactacccctacatcaacgagcaggtggccaagggcaagctggcaggcatc
gtcgatgacatcgcaaccaggtactccaccgcccaggtggcagccaccctggatgccctg
aaggatctgggcttcaccagggcccagtggtccggcgtgaccatggccttctcggacatc
gtggtgcccccggagcgtaccgacatcgtcgacgactaccagcgtcagaccgccaaggtc
aactcccagtacgacatgggtctgctgaccgacgaggagcgccgccaggagttgatcaac
ctctggaccgagtgcaccgacaaggtggcggatgccatgcaggagcacttcacaccgggc
aacaacgtgaacatcatggtgcagtccggggcacgtggaaactggatgcagatccgtcag
atcgccggtatgcgaggcctggtggccaaccccaagggcgagatcatcccccgaccggtc
aagtccaactaccgcgacggcctctcggtgctggagtacttcatctcccagcacggtgca
cgcaagggtctggcggatacggcacttcgtacggctgagtcgggctacctgacccgtcgt
ctggtcgacgtctcccaggacgtgattgtgcgcgaggaggactgcggcaccaagcgtggt
ctggccatgaaggtggccgagcgcgacgaccagggcaacctggtcctggtcaaggccgcc
gacggtggtccttactcccgcctcctggccgacgatgtgatcgaccccgcggacggcaag
accgtgctctacaagcgcggcgacgccctctccatggatgccctgcgcgacatggtcgcc
cacggtgttgaggaggtcaaggcccgttcggtcctgacctgcgagtccacacgcggagtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaggcc
gtcggtatcgtggccgcccagtccatcggcgagcccggtacccagctgaccctgcgttcc
ttccactccggtggtgtggcatcggcctccgatatcacccagggtctgccccgtgttacc
gagctcttcgaggcccgtacccccaagggtgaggccccgattgcggagttccccggcacc
gtcaaggtggaggacaccgaccgtggccgccaggtgacgctgacccccgacgattcctcc
gtcgaggccctgacctacccggtcaccaggcgtgcacccatgttggtcaaggacgggcag
cacgtcgaggcgggcacccagctgatcgagggctccgtggatcccaagaagattctgcgc
atcctgggaccgcgtgcggcccaggtgaacatcgtcaacgaggtccacacggtctaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgttcaccagatgctccgc
cgcgtgacggtcatcgactccggtgataccgacctgctgcccggcgagctggtcgaccag
tccaggttcaagtccgccaacatgaaggccgtcaaggcaggtggcaagcctgctgccggc
cgtcccgagctgatgggcatcaccaaggcctccctggccaccgattcctggctctccgcc
gcctccttccaggagacgacgcgcgtcctcaccgaggccgccctgagccagaaggtcgac
gacctgaaggggctgaaggagaacgtgatcatcggcaagctgatcccggcaggcaccggc
ctggcccggtaccacaacgccaccgtggagcccgacaaggccatccgcgacaccatctac
ccgaacttcgggctgggtggcgacgatgtggatctgagcgacgccgacctgaacgatgtg
gacttctccaacatcgacttcggggacctgaagctgggtgacgacttcaacccggatgac
ttcctgaacgaccatggtggccagagccacctgggctccgggcatggtgacatcaccggc
cagtccttggacgagtccggcatcggtcagaccgatggccaggatgcggcaggagaccag
ggaaccgaagccaccttctcctcctcggaccaggattccgatcagtga
DBGET
integrated database retrieval system