KEGG   Bifidobacterium indicum: BINDI_0286
Entry
BINDI_0286        CDS       T03564                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bii  Bifidobacterium indicum
Pathway
bii03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bii00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BINDI_0286
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bii03021]
    BINDI_0286
   03400 DNA repair and recombination proteins [BR:bii03400]
    BINDI_0286
Enzymes [BR:bii01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BINDI_0286
Transcription machinery [BR:bii03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BINDI_0286
DNA repair and recombination proteins [BR:bii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BINDI_0286
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 FadA Pentapeptide
Other DBs
NCBI-ProteinID: AIC91571
UniProt: A0A087VTB9
LinkDB
Position
434976..439103
AA seq 1375 aa
MLDVNAFDKLRIGLATADDIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTSVDEEQRHNDMPDLQDEFDTEVSRLEQKRDLEIDKRAKKLEED
LAELEKSDEAKGSLKSRLRNGAERDMTSIRKRYDDQIQRISAVFDRFKALKPGDMEGDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQDFDLEAAAKELRNEIDTGSGQRKARALKRLKVV
SAFLNTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLADMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVIAEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYYLTSAIEGAKGQG
RIFSSLAEARMALDLGEIDMQAKILLRVPEDFVMPKDWEPGELKVVDPEPGSPDVVKEEV
FKDGSKLFATNYGRVLFNETLPVDYPYINEQVAKGKLAGIVDDIATRYSTAQVAATLDAL
KDLGFTRAQWSGVTMAFSDIVVPPERTDIVDDYQRQTAKVNSQYDMGLLTDEERRQELIN
LWTECTDKVADAMQEHFTPGNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LAMKVAERDDQGNLVLVKAADGGPYSRLLADDVIDPADGKTVLYKRGDALSMDALRDMVA
HGVEEVKARSVLTCESTRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGTVKVEDTDRGRQVTLTPDDSS
VEALTYPVTRRAPMLVKDGQHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTDLLPGELVDQSRFKSANMKAVKAGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTG
LARYHNATVEPDKAIRDTIYPNFGLGGDDVDLSDADLNDVDFSNIDFGDLKLGDDFNPDD
FLNDHGGQSHLGSGHGDITGQSLDESGIGQTDGQDAAGDQGTEATFSSSDQDSDQ
NT seq 4128 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaatgcatttgacaaactgagaatcggactggccaccgccgacgacatc
cgcggttggagctatggcgaggtcaagaagcccgagaccatcaattaccgtaccttgaag
cccgagaaggacggcctgttcggcgagcagatcttcggacccacacgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcggttcaagggaatcgtctgcgagcgatgcggtgtc
gaggtaacccgttcgcgcgttcgccgtgaacgcatgggccacatcgaattggccgccccc
gtcacccacatctggttcttcaagggtgtgccctcccgactgggatacctcctggacatc
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccagtgtggat
gaggagcagcgtcacaacgacatgcccgaccttcaggacgagttcgataccgaggtgagc
cgtctggagcagaagcgcgacctcgagatcgacaagcgcgccaagaagctggaagaggat
ctggccgaactggagaagtccgacgaggccaagggttccctgaagtcccgcctgcgtaat
ggtgcagagcgcgacatgacctccatccgcaagcggtatgacgaccagattcagcggatc
tccgccgtcttcgaccgcttcaaggccctcaagcctggcgatatggaaggcgatgtggac
ctgtggcgtgagatgcaggaccgctacggtgactacttcgacggttgcatgggagccgag
gccatcaagaagcgcctgcaggacttcgacctggaggccgcggccaaggagctgcgcaac
gagatcgacaccggttcaggccagcgcaaggccagggccctcaagcggctcaaggtggtc
tccgccttcctgaacaccggcaacaagcccgaagccatggttctggatgtcatcccggtc
attcctcccgacctgcgccccatggtgcagttggacggtggccgtttcgccacctccgat
ctgaacgacctctatcgtcgtgtgatcaaccgtaacaacaggttgaagaggctgatcgaa
ctgggcgcccccgagatcatgctcaacaacgagaagcgcatgctccaggaggccgttgac
tccctcttcgacaacggtcgtcgaggacgtccggttaccggtgcatccaaccgtcctctc
aagtccctggcagatatgctcaagggcaagcagggacgcttccgtcagaacctgctgggt
aagcgtgtggattactccggtcgttccgtgattgtggtcggcccctccctgcgtatgcac
cagtgcggtctgcccaagcccatggccctggagctcttcaagcccttcgtgatcaagcgc
ctggtggatctgaactatgcgcagaacatgaagagcgccaagcgtctggtcgaccgcggc
gatgccgaggtctggggcgtcctggaagaggtcatcgccgaacatcccgttctgctcaac
cgtgcacctacgctgcaccgtctgggcatccaggcattcgagcccatcctggtcgagggc
aaggccatccacctgcccccgctggcctgcgcggccttcaacgccgacttcgacggcgac
cagatggcggtccacctgcccctgtcggcagaggcccaggccgaggcacgttcgctcatg
ctggcctcagacaacatcctcaagccggctgacggacacacggtcaccatgccctcccag
gacatgattctgggtctgtactacctgacgtccgccattgagggggccaagggtcagggt
cgaatcttctccagcctggccgaggcccgtatggcccttgacctgggtgagatcgacatg
caggccaagatcctgctccgcgtgcccgaggacttcgtcatgcccaaggattgggagccc
ggcgagctcaaggtcgtcgaccccgagcccggcagccccgatgtggtcaaggaagaggtc
ttcaaggacggttccaagctcttcgccaccaactacggacgtgtcctgttcaatgagacc
ctgcccgtggactacccctacatcaacgagcaggtggccaagggcaagctggcaggcatc
gtcgatgacatcgcaaccaggtactccaccgcccaggtggcagccaccctggatgccctg
aaggatctgggcttcaccagggcccagtggtccggcgtgaccatggccttctcggacatc
gtggtgcccccggagcgtaccgacatcgtcgacgactaccagcgtcagaccgccaaggtc
aactcccagtacgacatgggtctgctgaccgacgaggagcgccgccaggagttgatcaac
ctctggaccgagtgcaccgacaaggtggcggatgccatgcaggagcacttcacaccgggc
aacaacgtgaacatcatggtgcagtccggggcacgtggaaactggatgcagatccgtcag
atcgccggtatgcgaggcctggtggccaaccccaagggcgagatcatcccccgaccggtc
aagtccaactaccgcgacggcctctcggtgctggagtacttcatctcccagcacggtgca
cgcaagggtctggcggatacggcacttcgtacggctgagtcgggctacctgacccgtcgt
ctggtcgacgtctcccaggacgtgattgtgcgcgaggaggactgcggcaccaagcgtggt
ctggccatgaaggtggccgagcgcgacgaccagggcaacctggtcctggtcaaggccgcc
gacggtggtccttactcccgcctcctggccgacgatgtgatcgaccccgcggacggcaag
accgtgctctacaagcgcggcgacgccctctccatggatgccctgcgcgacatggtcgcc
cacggtgttgaggaggtcaaggcccgttcggtcctgacctgcgagtccacacgcggagtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaggcc
gtcggtatcgtggccgcccagtccatcggcgagcccggtacccagctgaccctgcgttcc
ttccactccggtggtgtggcatcggcctccgatatcacccagggtctgccccgtgttacc
gagctcttcgaggcccgtacccccaagggtgaggccccgattgcggagttccccggcacc
gtcaaggtggaggacaccgaccgtggccgccaggtgacgctgacccccgacgattcctcc
gtcgaggccctgacctacccggtcaccaggcgtgcacccatgttggtcaaggacgggcag
cacgtcgaggcgggcacccagctgatcgagggctccgtggatcccaagaagattctgcgc
atcctgggaccgcgtgcggcccaggtgaacatcgtcaacgaggtccacacggtctaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgttcaccagatgctccgc
cgcgtgacggtcatcgactccggtgataccgacctgctgcccggcgagctggtcgaccag
tccaggttcaagtccgccaacatgaaggccgtcaaggcaggtggcaagcctgctgccggc
cgtcccgagctgatgggcatcaccaaggcctccctggccaccgattcctggctctccgcc
gcctccttccaggagacgacgcgcgtcctcaccgaggccgccctgagccagaaggtcgac
gacctgaaggggctgaaggagaacgtgatcatcggcaagctgatcccggcaggcaccggc
ctggcccggtaccacaacgccaccgtggagcccgacaaggccatccgcgacaccatctac
ccgaacttcgggctgggtggcgacgatgtggatctgagcgacgccgacctgaacgatgtg
gacttctccaacatcgacttcggggacctgaagctgggtgacgacttcaacccggatgac
ttcctgaacgaccatggtggccagagccacctgggctccgggcatggtgacatcaccggc
cagtccttggacgagtccggcatcggtcagaccgatggccaggatgcggcaggagaccag
ggaaccgaagccaccttctcctcctcggaccaggattccgatcagtga

DBGET integrated database retrieval system