Bombus impatiens (common eastern bumble bee): 100747517
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Entry
100747517 CDS
T04362
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bim
Bombus impatiens (common eastern bumble bee)
Pathway
bim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100747517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bim03019
]
100747517
Enzymes [BR:
bim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100747517
Messenger RNA biogenesis [BR:
bim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100747517
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
100747517
NCBI-ProteinID:
XP_012236850
UniProt:
A0A6P3UM64
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHSERNLKNSLFDTLNDRYMAWKRNI
QQFVIVQFGITTFYRVPSNNAYKADSFSFYLFPRSIPLKNRQLSWEVEAIDFLYKHGFDF
NKFLVGGISYIDETDESLLRDHIAHGDVENYLSLLSYDEEENFKECKSKVYEWISNKLEN
APLKLEVITPMVQYVLHKDLRNNYNDIWITSDNKSINVMKISSNAQDDLFKKGNLEEALL
DVYLGFSKVFKLLSSSKKTIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYD
TKFLSFELRKLHSRDEVNWKINSLNILYEYFTTQGRITTYNSPEIIFNEEFSHKKNYHSA
GWDSYFCGYVFVKMAHIFCVKKFGTGLEERTASHSELMSSVKDFINSINITRGNEMYMKL
DGEDPVLSRPQWLHVKLKSPSLDIKQLMEKFSSYGSVDVMPFARRRVLVAVSSHNTASEI
LQRFKNSEELQVARYNRIKHATSMTIFLWSGAVLSGGVLAWMLKNISKTYINQ
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttttgaatagcaattttgatgctgtgtatccacggatagagaatgctata
aacaatgcagctttcattgcgatagatgctgaaatgtcaggtatacattcggagagaaat
ttgaaaaatagtttatttgatactctcaatgatcgttacatggcatggaaaagaaacatt
cagcaattcgtaattgtacaatttggcattacaactttttaccgtgttccttctaacaat
gcctataaagcggacagctttagtttttacttgtttcctagatctattccattaaaaaat
agacaattgtcgtgggaagtggaagcgatagatttcctttataaacatggcttcgatttt
aataaattcttagtcggaggtatttcgtacattgacgaaacagatgagagtttactgcgt
gatcacatagcacatggcgatgtagaaaattatttatcactgttatcctacgacgaagaa
gaaaatttcaaagagtgcaagagcaaggtttatgaatggatttctaataagttagaaaat
gcaccattaaagttggaagttattactcctatggtacaatatgtattacataaagactta
agaaataattacaacgatatttggattacatcggacaataaatcaataaatgttatgaaa
atatcgagtaatgcgcaggatgatttgttcaagaagggtaatttggaagaagcactacta
gatgtttatttaggtttttccaaagtatttaaacttttgtcctctagtaagaaaacgata
atagggcacaatatacttttggatttaatgttcatgcatcaacagttctataagccacta
ccagattcatacaaagaattcaaaagtaatatacatacattatttccacaaatatatgac
acaaaattcttaagctttgagttgcgaaaattacatagcagagatgaagtaaactggaaa
ataaattcattgaatattttgtacgaatattttacaactcaaggacgaattacaacttat
aattcaccagagattatctttaatgaagaattttcacataaaaagaattatcatagcgct
gggtgggattcttacttttgtggatatgtatttgtgaaaatggcacatatattttgtgta
aagaaatttgggacgggtttagaagaaaggacagcgtcccattctgagttaatgagtagt
gtaaaagattttataaattctataaatataacgagaggcaatgaaatgtatatgaaactc
gacggagaagatccagtgttatcgagaccacaatggcttcatgtcaagttgaagtcacca
tctctagatattaagcagttaatggagaaattctcatcttatggttcagtggatgtaatg
ccttttgctcggagacgcgttttagtagctgtctcaagccacaataccgcgtcggagata
ttgcagcgattcaagaacagcgaggaattacaggtggcacggtacaaccgcataaaacac
gccacgtccatgaccatttttttgtggagcggagctgttctgtccggaggtgttcttgcc
tggatgttaaaaaatatttctaaaacgtatatcaatcaataa
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