Brachyspira intermedia: Bint_2728
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Entry
Bint_2728 CDS
T01847
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bip
Brachyspira intermedia
Pathway
bip03030
DNA replication
bip03410
Base excision repair
bip03420
Nucleotide excision repair
bip03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bint_2728 (ligA)
03410 Base excision repair
Bint_2728 (ligA)
03420 Nucleotide excision repair
Bint_2728 (ligA)
03430 Mismatch repair
Bint_2728 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bip03032
]
Bint_2728 (ligA)
03400 DNA repair and recombination proteins [BR:
bip03400
]
Bint_2728 (ligA)
Enzymes [BR:
bip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Bint_2728 (ligA)
DNA replication proteins [BR:
bip03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bint_2728 (ligA)
DNA repair and recombination proteins [BR:
bip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Bint_2728 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bint_2728 (ligA)
MMR (mismatch excision repair)
DNA ligase
Bint_2728 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bint_2728 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
HHH_3
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AEM23322
UniProt:
G0EQ64
LinkDB
All DBs
Position
3083091..3085082
Genome browser
AA seq
663 aa
AA seq
DB search
MNKEEAKQKIEQLTETINYHNKLYYTDDNPEIEDYEYDKLFRELENLEREFPELKKDDSP
TNKVGGTILEKFEKFEHPIAMYSLSNVMNEEEFLEFDNRMQKELNQSKIKYTVENKFDGL
ALELIYEKGKLTVASTRGDGQVGENVTNNVKMMNNVPKSIKEKKKLIVRGEALITKKDFE
ALNKEREELEEIPFANARNAASGGLRQLDSAESKKRRLKFFAYQIANYKDFDLTNEYKSM
EFLSELGFTVEGVHPNIDAKKVLETYYDIQEKRSKMDYEIDGLVIKVDDVKHQEKLGFLS
RAPRFAVAFKFKPEEKETVLKNIEVQVGRTGALTPVAKLEPVQVGGVTVSNVTLHNPNEI
KSKDIRIGDTIVVIRSGDVIPKITRVVLEKRPADSKPFEFPKKCPVCGGDTAVTDGDVIV
RCINEECPSKITRYIEYFVSKPAMNMERIGKEWIAVFTKSGLVKTPADLYKITRDDLFKF
ERMGEKLAGYMLESIENSKNTTLKRFIYALGIRQVGETTADLLAKYFTSIDNFKKATIDD
LQNIEGIGEISAKSIYDFLHNEKTLKLIDDLLAAGVNPVFEKVVTVESPLTGKNVVITGS
IEGFTRNSAKEAAERLGATVQSAVSKNTNILIVGEKAGSKLKKAQDLGVEIMEADKFIKL
ANG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaagaagctaaacaaaaaatcgaacaattaacagaaactattaattaccat
aacaaactttattatacagatgataaccctgaaatagaagactatgaatatgataaactt
ttcagggaattagaaaatcttgaaagagagttcccagaattaaaaaaagatgacagccct
actaataaagtgggaggcactatattagaaaagttcgagaaatttgaacaccctattgct
atgtactcactttctaatgttatgaatgaagaagagtttttggaattcgacaacagaatg
caaaaggaacttaatcaaagcaagattaaatacacagttgaaaataaatttgacggactt
gctttagagcttatttatgaaaaaggaaaactcacagttgcaagcacaagaggagacgga
caagttggagagaatgttaccaataatgttaagatgatgaataatgttcctaaaagcata
aaagagaaaaagaaactcattgtaagaggcgaagcattaataacaaaaaaagattttgaa
gcattaaataaagaaagagaagaacttgaagagataccttttgcaaatgctagaaatgca
gcttccggcggattaagacaattagacagtgctgaaagtaaaaaaagaagattaaaattc
tttgcttatcagattgctaattataaagattttgatttaactaatgaatataaatcaatg
gagtttttatcagaattaggattcacagttgaaggcgttcacccaaatattgatgctaaa
aaagtattagaaacttattatgatatacaagaaaaaagaagcaaaatggattatgagatt
gacggactcgtaattaaagttgatgatgttaagcatcaggagaaattaggattcttgtca
cgtgccccaagatttgcagtagcattcaaattcaagcctgaagaaaaagaaactgtatta
aaaaatattgaggttcaagtcggacgtaccggagcattaacaccagttgctaaattagag
cctgttcaagttggaggtgttacagtttcaaatgttacacttcataaccctaacgagata
aaatcaaaagacataagaatcggcgatactattgtagttatacgttccggagatgttata
ccaaagatcacaagagtagtattggaaaagcgtcctgcagatagtaagccttttgagttc
cctaaaaaatgtcctgtttgcggaggcgatactgctgtaactgatggcgatgtaattgta
agatgtattaatgaagaatgtccgagcaagataactagatatatagaatattttgtttca
aagcctgctatgaatatggagagaataggaaaagagtggattgcagtatttacaaaaagc
ggacttgttaaaactcctgctgacctttacaaaataacaagagatgatttatttaaattt
gaaagaatgggggaaaaattagcaggatacatgcttgaatctattgagaacagtaaaaac
actactttaaaaagatttatatatgcattaggtattcgtcaggttggagaaactactgct
gacttactagctaaatatttcacatcaatagataatttcaaaaaggctactattgatgat
ttacaaaatattgaaggaataggcgaaataagtgctaaaagtatttacgatttccttcat
aatgaaaaaacattaaaattgatagatgatttacttgcagcaggagttaatccagtattt
gaaaaagttgtaacagtggaatctcctctcactggaaagaatgttgtaataacaggttca
atagaaggatttacgaggaattctgcaaaagaggctgctgagagattaggtgcaactgtt
cagtctgctgtatcaaaaaacacaaacattctaattgttggagagaaagcaggaagcaaa
cttaaaaaagctcaggatttaggcgtagagataatggaagctgataagtttataaagctt
gctaatgggtaa
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