KEGG   Bos indicus (zebu cattle): 109573805Help
Entry
109573805         CDS       T04792                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu03410  Base excision repair
Module
biu_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:biu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109573805 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:biu03400]
    109573805 (LIG3)
Enzymes [BR:biu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109573805 (LIG3)
DNA repair and recombination proteins [BR:biu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109573805 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme Synaptonemal_3
Motif
Other DBs
NCBI-GeneID: 109573805
NCBI-ProteinID: XP_019836816
LinkDB All DBs
Position
19
AA seq 1002 aa AA seqDB search
MTLAFKILFPPTLRVLRKKELCLFREHRRPDIRHFGRWSETVFCGHHLLQRRKPVPSFQE
SNLKPRATCLVYLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGK
VVPNPFSESGGDMKEWYHIKCMFEKLEXARATTKKIEDLTELEGWEELEENEKEQISQHI
ADLSSKATSTPKKKAVVQAKLTATGQVASPVKGASFVTNSNPRKFSGFSAKPNNSGEAHS
SPTPKTPKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNSDDMTRDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDFIPRAFPGGHSMILDSEVLLIDNRTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKLLHDNMVEIPNRIMFSEMKQVTKASDLVDMINRVIQEGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
SSQKWCTVTKCAGGHDDATLARLQTELDMVKISKDPSKIPNWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATTLPQLKELYQLSKERAAF
AITAGDEGSSATGGSSGENEGTSGPAVPHKAPRASPKQPPTSAKKAGGKPGGCTSRGGNL
PAAEPSPVRAGVKRKAPDVTPCQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLV
QEFDVGSATHVLGGGDRNPEAQQVSPEWIWACIRKRRLVAPC
NT seq 3009 nt NT seq  +upstreamnt  +downstreamnt
atgactttggcttttaagatcctcttcccaccaactctccgtgtactcaggaaaaaagaa
ctgtgcctattccgagaacatcgccggcctgacataagacactttggccggtggtcagag
acagttttttgtggacaccacctcctccagagaagaaagcctgttccgtccttccaggaa
agcaacctaaaaccacgtgccacctgccttgtttacttgccagggtcgcatgtgggactc
tgyagtggcccctgtgagatggcagagcaacgcttctgtgtggactacgccaagcgtggc
acggctggctgcaaaaaatgcaaggaaaagattgtcaagggcgtatgccgaatcggcaaa
gtggtgcccaatcccttttcagagtcggggggcgatatgaaagagtggtaccacattaaa
tgcatgtttgagaaactggagckggcccgggccaccacaaaaaaaattgaggacctcacc
gagctggaaggctgggaagagctggaagagaacgagaaagagcagataagtcagcacatt
gcagatctgtcttccaaggcaacaagcacaccaaagaagaaagctgttgtccaggckaag
ttgacagccactggccaggtcgcatctccagtgaaaggtgcctcatttgtcaccaattcc
aatccccggaagttttctggcttttcagccaagcccaacaactctggggaagcccactcc
agccctacccctaagacccctaagacaagtctgtcctcaagcaaatgtgacccgaaacac
aaggattgtctgctgcgtgagtttcggaagttgtgtgccatggtggctgaaaatcctagc
tacaacacgaaaacccagatcatccaggacttccttcagaaaggctcagcaggagatggt
ttccacggtgaygtgtacctaacagtgaagctgctgctgccgggtgttattaagagtgtt
tacaacttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaactca
gatgacatgacacgagacctagagcagggtgacgtgtcagagacaatcagagtcttcttt
gagcagagcaagtctttccctccagctgccaagagcctccttaccatccaggaggtggac
gaattcctcctgcggctctccaagctcaccaaggaggatgagcagcaacaggccctgcag
gatatcgcctccaggtgtacagccaatgaccttaagtgcatcatcaggctgatcaagcat
gacctgaagatgaactcaggggcaaaacacgtgctagatgcgctagaccccaatgcctat
gaagccttcaaagcctcacgcaacctgcaggatgtggtggagcgggtcctccgcaacgag
caggaggtrgagaaggagccaggccagagacgagctctgagtgtccaggcctcyctgatg
accccagtgcagcccatgctggctgaggcctgcaagtccatcgagtatgccatgaagaag
tgtccaaacggcatgttctctgagatcaagtatgacggggarcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcccgtcctgccacacaaggtg
gcccactttaaggacttcatcccccgggctttccctgggggccacagcatgatcttggac
tctgaggtgctcctgatcgacaacaggacaggcaaaccactgccctttgggaccctggga
gtgcacaagaaagctgccttccaggatgccaatgtctgcctgtttgtttttgattgtatc
tacttcaatgatgtcagcttgatggataggcctctgtgtgagcggcggaagcttcttcat
gacaacatggtggagattcccaaccggatcatgttctcagaaatgaaacaagtcacaaaa
gcttccgacttggtggacatgatcaacagggtgatccaagaggggctggaagggctggtg
ctgaaggacgtgaagggtacatatgagcctggaaagcgtcattggctgaaagtgaagaaa
gactatttgaacgagggtgccatggccgacacagctgacctggtggtgcttggggccttc
tacgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgacccg
agcagccagaagtggtgcaccgtcaccaagtgtgcaggaggccacgacgacgcgacgctc
gcccgcctgcagacggaactggacatggtgaagatcagcaaggatcccagcaagataccc
aactggctgaaaatcaataagatctactaccctgacttcatcgttccagacccaaagaaa
gctgccgtgtgggagatcacaggggctgaattctcgaaatctgaggctcacacagctgat
gggatctccatccgattccctcgctgcacccgaatccgtgatgataaggactggaagtcc
gccacgaccctcccccaactcaaggagctgtaccagctgtccaaggagcgcgcggccttc
gccataacggccggagacgaggggagctccgccacagggggcagcagtggggagaacgag
ggcacctcagggccggctgtgcctcacaaggccccaagagcctcccccaagcagcctccc
accagcgccaagaaggctgggggcaagccgggcggctgcaccagcagaggtggcaacctg
ccagctgcagagccctcccctgtgagagcgggagtgaaacggaaggctcctgatgtgacc
ccgtgccaagccaaggtgctgctggacatcttcactggagtgcggctctacctgccgccc
tccacgccagacttcagccgcctcagacgctactttgtggcattcgatggggacctggta
caggaatttgacgtgggctcagccacacatgtgctgggtggcggggacaggaaccccgag
gcccagcaggtctcccccgagtggatttgggcgtgtatccggaaacggaggctggtggct
ccttgctag

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