Bifidobacterium kashiwanohense PV20-2: AH68_06620
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Entry
AH68_06620 CDS
T03496
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bka
Bifidobacterium kashiwanohense PV20-2
Brite
KEGG Orthology (KO) [BR:
bka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bka03016
]
AH68_06620
Enzymes [BR:
bka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AH68_06620
Transfer RNA biogenesis [BR:
bka03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AH68_06620
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
DUF5499
Motif
Other DBs
NCBI-ProteinID:
AIZ14763
UniProt:
A0A0A7I3A0
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All DBs
Position
complement(1439953..1441248)
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AA seq
431 aa
AA seq
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MTDEPRLQAEPREGVPDVIDTLPAFREYCSALASSHGSLAADAERASGFRYGHDDWLVQF
KRDGAGIGLLDPQALTAEGIDWNDFNTAVGDAVWILHDSLQDLPGFNDLGLKPQRLFDTE
IAARLLGMKRFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETI
MRAELRRQGKIEWAEEEFDYALREGTAPRKEHPVPWLRISHITEIMKDRQALAVAKALWT
KRDELARQYDISPTLLLADRTIIEVAERKPHNAAQFRAVRSINERVRIQADAEQEKMFER
YAPIQRKIKPSMWKKIIQQALDLPESEWPVIDNGNPQNQEAQATSAPRATRAWRERYPER
LATLDKVRKVVAQIAEDTRTPAEVIIKPQYLRNLCWTDEPQERDVAQFLTEQGARAWQVA
LVAESVSRAIM
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
ttgactgacgagccaaggttgcaggccgagccgcgtgagggcgtgcccgatgtgatcgac
accctaccggcatttcgagagtactgcagcgctttggcgtcttcccacgggtcgcttgct
gccgatgcggagcgagcatccggtttccgatacggtcatgacgattggttggtgcagttc
aaaagggacggtgccggcataggattgcttgacccgcaggcattgactgccgaaggtatt
gattggaacgatttcaatactgccgtaggcgatgcggtatggattctgcatgattctttg
caggatctaccaggattcaatgatcttggattgaagccgcagcggttattcgacaccgag
atcgccgcgagactgctcggcatgaaacggttcggtttggccgccgttacggagcattac
ttgggattgacacttgccaaagagcattccgcagccgattggtcatatcgtccgttgccg
cgtgactggcgcaattatgcggcgttggatgttgaattgctgatcgagctggaaacgatc
atgcgcgccgaactgcgccgtcaaggcaaaatcgaatgggccgaggaggaattcgattac
gcgctgcgcgaaggaaccgcgccacgcaaagagcatcccgttccatggctgcgcatctcg
catatcaccgaaatcatgaaggaccgtcaggccttggctgtggcgaaagcactatggacc
aagcgagacgaactggcgcgccaatacgatatttcgccaacgctgctgcttgccgacaga
accatcatcgaagtggcggagcgcaagccacacaatgccgcgcaattcagagcggtgcgt
tccatcaacgaacgtgtgcgcatccaagctgacgccgaacaggagaaaatgttcgaacgc
tacgcgcccatccaacgcaaaatcaagccaagcatgtggaagaaaataatccagcaggca
cttgatcttccggaaagcgagtggccggtcatagacaacggcaatcctcagaaccaagaa
gcgcaagccacatccgccccacgtgcgacgcgagcctggagggaacgctatccggaacgc
ctcgccacacttgacaaggtacgcaaggtggtggcgcagatagcggaagatacgcgtaca
ccagcggaagtcatcatcaaaccgcagtatttgcgtaacctctgctggacggatgagccg
caggaacgtgatgtcgcgcaattccttaccgagcagggcgcgagggcatggcaagtcgcg
ctggttgcagagtccgtgagtcgcgctatcatgtag
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