Bifidobacterium longum subsp. infantis 157F: BLIF_0218
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Entry
BLIF_0218 CDS
T01420
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
blf
Bifidobacterium longum subsp. infantis 157F
Pathway
blf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLIF_0218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blf03021
]
BLIF_0218
03019 Messenger RNA biogenesis [BR:
blf03019
]
BLIF_0218
Transcription machinery [BR:
blf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BLIF_0218
Messenger RNA biogenesis [BR:
blf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BLIF_0218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
SAP
NACHT
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
BAJ70365
LinkDB
All DBs
Position
290160..292229
Genome browser
AA seq
689 aa
AA seq
DB search
MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAA
KTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRT
RRKAADDAASEPRAARRRRDDDQPDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERH
EDVEVPLIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDD
HEFVRRNRRDRSDRNDRDTRNDRSDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSR
REEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRA
PREGDRRNQRQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGR
IMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDME
RTVQGEVISSTFDRPASDHTTVAELAVERAKRLVELGQDVVVLLDSMTRLARAYNIAAPA
SGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGN
MELRLSRELADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLV
PRLKKTATNRDFLAAIVQQANTGNAVNGN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatagccagaatcttgaggatatgaagctgcctgagctcaaagagctcgctaaa
cagatgggcctgcgcggcacgtcgaccatgcgcaagcccgagctgctcgccaccctgcag
gcggcgcgcaatggtggagagccgccggccggtgtgaccgtgcgcgcccccaaggccgcc
aaaaccgccaaggtcgtcaaggctccgcagtccgatgccgctgaggccaacaccacagac
aatgctgacgtggccacccagtcgccggctccggctccggctgccacggaaccgcagctc
gatttgccgcttcccgtggccgacgatgccaagaaggacgagaccgaaccgcgacgcacc
cgtcgtaaggccgccgatgatgccgcatccgaaccgcgtgcggcccgccgtcgtcgcgat
gacgaccagcccgatttcgctcgccgcaagccgcgcaagaaggccgatgaggccggcgat
ctgctggccacgctcgatttgggagatgcagcgcctaccgagcgtcgccgcgagcgtcac
gaggacgtggaagttccgctgattcgccgagtccgtgatgatgaggacgagcagcctcgc
cgccgtcgtcgcactgcggaaaacagcgaagaaaccgtgcgtgacctcgacgatatcctg
gccacgctgcccacgcagaagcacgaggaaacgtccgaagacggcgagcagaacgacgat
cacgagttcgtgcgtcgtaaccgccgcgaccgtagcgatcgcaacgatcgcgatacccgt
aatgatcgcagcgatcgccgtaaccgtcgcatgcgtggccgtgatcgcgacaacgccgat
gatgatcgtcgctatgatgatcgcgataatcgtagcgatcgcaatgaccgtgatagccgc
cgcgaagagccgcaggaggatctggtgccggtggccggcatcgtcgacgtgctcgactcc
tacgcttttgtgcgcacttccggctacctgcccggcccgaacgacgtgtacgtttccatg
ggccaggtcaagaagtacggcctgcgcaagggcgatgccgtgcatggttcgattcgcgcc
ccgcgtgaaggcgaccgccgcaaccagcgccagaagttcgtgccgctgcaggccatcgat
tccatcaacggccaaagcgttgaagaagcgctcaaccgtccgcagttctccaagctcacg
ccgctgtacccgcaggagcgtttgaagcaggagaccgccccgaacaagctcaccggccgt
atcatggacatcgtttccccaatcggcaagggccagcgtggcctgattgtctccccgccg
aaggccggtaagaccatcaccctgcagaacatcgccaactccatcgccgccaacaacccc
gaggtccaccttatggtggtgctcgtggacgagcgacccgaagaggtcaccgatatggag
cgcacggtccagggcgaggtcatttcctccaccttcgaccgtccggcctccgatcacact
acggttgccgaactggccgtcgaacgcgccaagcgtcttgtggagctcggccaggacgtg
gtcgtactgctcgattccatgacccgactggctcgcgcttacaacatcgcagcccctgcc
tccggccgcatcctgtccggtggtgtggacgcgcaggccctctacccgccgaagaagttc
ttcggtgcggcccgcaacatcgaaaacggcggctccctgaccatcatctcatctgcgctg
gtggaaaccggctccaagatggacgaggtgattttcgaggagttcaagggcaccggcaac
atggaactgcgcctgtcccgcgagctggcggacaagcgactgttcccggccatcgacatc
aacgcttccggcacccgccgcgaggagctcatcaccaacccgcaggaactgccgattatc
taccgtctgcgtcgactgctgggcggcatggagcccgagcaggcctaccagacgctggtg
ccgcgcctcaagaagaccgccaccaaccgcgacttcctcgccgccatcgtgcagcaggcc
aacaccggcaacgcggtcaacggcaactga
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