KEGG   Brevibacterium aurantiacum: BLSMQ_3103Help
Entry
BLSMQ_3103        CDS       T04775                                 

Definition
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
blin  Brevibacterium aurantiacum
Pathway
blin03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:blin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BLSMQ_3103
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blin03400]
    BLSMQ_3103
Enzymes [BR:blin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BLSMQ_3103
DNA repair and recombination proteins [BR:blin03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BLSMQ_3103
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOP54805
UniProt: A0A1D7W757
LinkDB All DBs
Position
complement(3389500..3392061)
Genome map
AA seq 853 aa AA seqDB search
MSRDEQKVTVDGHRLTLTNLDKVFYPKTGTTKGEVLDYYARISEHLIRHAHDRIATRKRW
VDGVGTPQKPGDVFFEKNLPESAPSWITSRSIRHSTGSKRYPLVQDRATLTYLAQMASLE
IHIPQWQVAKGSADPGTIDSMTRHPDRMVFDLDPGQGRGLADCIEVAQLVRELLNGMGLD
SYPVTSGSKGIHLYAPLDASASSQQISDVAHELARSLEADHQDLIVSAMKKSLRENKVLI
DWSQNSAAKTTVAPYSLRGRFTPTVAAPRTWDELDDPSGVDQLRFEEVLERIEDLGDLLE
PLAKTAGDSADPAPTSAKPSPTSAQPSSASEKAPRDRLDIYRSKRDPKRTSEPVPDSHGT
SGDELTFVIQEHHASTLHWDFRLEHDGVLVSWALPKGPPTDPKTNHLAIQTEDHPVEYGS
FEGMIAKGQYGAGEVAIWDSGTYELEKWKEGREIIAVLHGAKDGGLGGVRRFALFNTGEH
GPNKEPAKNWMIHLTKDSPKNTSKNSSKNTSKSSPRRGSATSENTDSDRAEPTDMAPMLA
SIGSLRSVRRQAEDWAFEMKWDGIRALATVRPGTEGSSGSIALTSRNGHDMTKAYPELME
LATCVDVDCILDAEIVALGPGSRPDFGRLQRRMGLTRESDIERERERTPVHLMVFDVLHA
DGTSLLKTPYLKRRERLHDLVTEGEHVHVPSAFEGTVDEALEASRELQLEGVMAKQTGST
YLPGRRTRTWAKLKHSFTRDVIIVGWRTGKGERSATFASLLLAAHDKNGLVYLGRVGTGF
DDHQLQSLRAKLDRLSRKTPPLDVPAAESRDANWVRPSLVGEVQFGGITKDGRLRHPVWR
GLREDIDPEEVTA
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atgtcacgcgatgagcagaaggtcaccgtcgacggacatcggttgacgctgaccaatctc
gataaggtcttctatcccaagaccggcacgaccaaaggagaggtgctcgactactacgcg
cgcatctctgagcacctgatccggcacgcccatgatcgcatcgccacccgcaaacgctgg
gtcgacggcgtcggcacaccgcagaaaccgggtgatgtgttcttcgagaagaatcttccc
gaatcggcaccatcgtggatcacttcccgctccatccgtcattccaccgggtccaaaagg
tacccgctggtccaggaccgtgcgacgctgacctatcttgcgcagatggcctcactcgag
atccacatcccccaatggcaggtcgcgaaggggtcagccgatccgggcaccatcgactcg
atgacacgacacccggatcgcatggtcttcgatctcgaccccggccagggtcgcggactg
gccgattgcatcgaggtcgcacagctggtgagagagctgctgaacgggatgggtctcgac
tcctacccggtgaccagcggttccaagggaatccacctctatgcgccgctcgatgcctca
gcatccagtcaacagatctccgacgtcgcccacgaattggcgcgcagtcttgaagccgat
catcaggacctcatcgtctcggccatgaagaagagcctgcgagagaacaaggtgctcatc
gactggtcccagaactccgcagctaagacaaccgtcgctccctactccctgcgcggtcgg
ttcacacccaccgtggcggcaccgcgaacctgggacgaactcgacgacccctccggtgtc
gaccaactgcgcttcgaggaggtcctcgagcggatcgaggacctcggcgatctgctcgaa
ccgttggcgaagaccgccggcgattccgcagatccagcacccacctcggcgaagccatca
cccacttccgcgcagccatcatcggcatcggagaaggcaccccgcgatcgtctcgacatc
taccggtcgaagcgtgatccgaagcgcaccagcgaaccggtgcccgatagccacggcacc
agcggggacgagctcactttcgtgatccaggaacaccatgccagcaccctccactgggac
ttccggctcgaacatgatggtgtcctggtctcgtgggcgctgccgaagggaccgcccacg
gatccgaagaccaatcacttggcgatccagaccgaggaccaccctgtcgaatacggaagc
ttcgaaggcatgatcgcgaaaggccaatacggtgccggtgaggtcgcgatctgggactca
gggacttacgagctcgagaaatggaaggagggccgcgagatcatcgccgttctccacggt
gctaaggacggtggacttggcggagtgcgacggttcgcactgttcaacaccggcgagcac
gggccgaacaaggaacccgcgaagaactggatgatccacctgaccaaagactcgcccaag
aacacatctaagaactcatccaaaaacacatccaagagctcgccgaggcggggctcggcc
acatctgagaacaccgattccgatcgcgccgagcccacggatatggcaccgatgttggcc
agtatcggcagtctccgctccgttcggcgccaggccgaggactgggcgttcgaaatgaag
tgggacggaatccgtgcgctcgccaccgtcaggccgggcacagaggggtcttccgggtcg
atcgcgctgaccagccgcaacggccacgatatgacgaaggcctaccccgaactgatggag
ctcgccacttgtgtggacgtcgattgcatccttgacgcagagatcgtcgcactcggcccg
ggcagtcgcccggacttcgggagactgcagcgcagaatggggctgacgcgtgagagcgac
attgagcgcgaacgggagcgcactcctgtgcatctgatggtcttcgacgtgctgcacgct
gatggcacctccctgctgaagaccccgtatcttaagcgacgcgagcggctccacgacttg
gtcaccgagggtgagcacgtccatgtgccttccgccttcgaaggaaccgtcgacgaggcg
ttggaggccagccgtgaactccagctcgaaggtgtcatggcgaagcagaccggcagcacc
tatctgccgggccgccggacacgaacctgggccaagctcaaacattccttcacccgagac
gtgatcatcgtcgggtggcgcaccggcaagggggagcgctcggcgaccttcgcctcactg
ctgctggccgcccacgacaagaacggcctggtctatctgggacgtgtgggcaccggcttc
gacgaccaccagttgcagtctctgcgggccaaactcgatcggctgagccggaagacacct
ccactggatgttcctgccgccgagtcacgtgatgcgaactgggtgcggcccagcctcgtc
ggcgaggtccaattcggagggatcaccaaggacggtcgtctgcgtcatcctgtgtggcgt
gggcttcgcgaggacatcgacccggaggaggtgaccgcctga

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