Bermanella marisrubri: HF888_03450
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Entry
HF888_03450 CDS
T06527
Symbol
kdsA
Name
(GenBank) 3-deoxy-8-phosphooctulonate synthase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar00540
Lipopolysaccharide biosynthesis
bmar01100
Metabolic pathways
bmar01250
Biosynthesis of nucleotide sugars
Module
bmar_M00063
CMP-KDO biosynthesis
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HF888_03450 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
bmar01005
]
HF888_03450 (kdsA)
Enzymes [BR:
bmar01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
HF888_03450 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
bmar01005
]
Lipid A
HF888_03450 (kdsA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
GFO_IDH_MocA
DUF5091
Motif
Other DBs
NCBI-ProteinID:
QIZ83341
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Position
763067..763909
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AA seq
280 aa
AA seq
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MMIEKVSVASLDVANNIPFTLFGGMNVLESRDLAMSICEEYVKVTEKLGIPYVFKASFDK
ANRSSINSYRGPGMDEGLKIFQEIKDTFGVPIITDVHEPYQAAPVAEVVDVIQLPAFLAR
QTDLVVAMAKTGAAINVKKPQFLAPHEMRHIIKKFEEAGNQRVMLCERGSSFGYNNLVVD
MLGMDEMKTMAPVIFDATHALQRPGGRSDSADGRRAQAFELARSGMALGIAGLFLEAHPN
PDEAKCDGPCALPLDKLEPYLEQMKAVDDLVKSFEPVIIT
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgaaaaggtttctgttgcgagcttagatgtcgctaataacattccatttacg
ctctttggcggcatgaacgttttggaaagccgtgatctggccatgtctatttgtgaggaa
tatgtcaaggtcactgaaaagcttggtattccatacgtatttaaggcatctttcgataaa
gcgaaccgttcgtctatcaattcgtatcgcggcccaggcatggatgaaggccttaagatc
ttccaagagattaaagatacctttggtgtacctattattacagatgttcacgagccatat
caggcggcaccggtcgctgaggtagtggatgtgatccaattgcctgcttttttggcgcgc
caaacagacttggtcgtggctatggcaaaaactggagctgccatcaacgttaagaaaccc
caatttcttgcccctcacgagatgcgacatattatcaaaaagtttgaagaagctggtaat
cagcgcgtcatgctatgtgagcgtgggtctagctttggttataacaaccttgttgtggat
atgttgggtatggatgaaatgaaaaccatggcgcccgtcatttttgatgccacccatgcg
ctacagcgtccaggtggtcgttctgattcagcggatggtcgtcgcgctcaagcgtttgaa
cttgcccgttctggcatggcattaggcatcgctggtttattcctggaagcacatccaaat
ccggacgaagctaagtgtgacggaccgtgtgcactgccattagataagttagagccgtat
cttgaacagatgaaagccgttgatgatttggttaaatcctttgagccagtcatcattacg
taa
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