Bermanella marisrubri: HF888_10235
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Entry
HF888_10235 CDS
T06527
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
bmar
Bermanella marisrubri
Pathway
bmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HF888_10235 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_10235 (uvrB)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF888_10235 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HF888_10235 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_33
Microtub_bd
AAA_22
Rbsn
DUF1192
Motif
Other DBs
NCBI-ProteinID:
QIZ84573
LinkDB
All DBs
Position
complement(2201567..2203597)
Genome browser
AA seq
676 aa
AA seq
DB search
MSEKEFEVKSKYQPAGDQPKAIEQLMDGLESGLARQTLLGVTGSGKTFTMANVIAKAQRP
TIVLAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI
EQMRLSATKALMERRDCIIVATVSSIYGLGDPSSYLKMVLHLDRGDIIDQRGVLRRLAEL
QYTRNDMDFHRATYRVRGDVIDIFPAESEDEAVRVELFDEEIEELSIFDPLTGEILRKVP
RITIFPKSHYVTPRETLVDMIDEVKAELKERLTQLKDNNKLVEAQRLEQRTQYDLEMIQQ
LGYCTGIENYSRYLSGRPQGAAPPTLFDYLPDDALMFIDESHVTIPQFGAMYKGDRSRKE
TLVEFGFRLPSALDNRPMKFDEWEAISPQTIFVSATPGKYEAEYQDAVVEQVVRPTGLVD
PIVEVRPATTQVDDALGEIRNRVEKGERILITVMTKRMAEDLTDFLFEHDVRVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSDRSLIQTIG
RAARNVEGKAILYAERITDSMKRAMEETKRRREKQIAFNEEHGITPQGIKKSVEDILEGA
VTPGKKIGHGRNRKKVAEKGAGYTADMEHLNVNDLNKRITQVEDAMFKAAKDLKFEEAAR
LRDELHELKDQLIKNS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaaagagtttgaggtaaaaagtaagtatcagccggcaggggatcagcctaaa
gccattgagcaattaatggatggtttagaaagcggtcttgctcgtcaaactctactcggg
gtaacgggttctggtaaaacgtttaccatggccaatgttatcgccaaggcacaacgacct
acgattgttttagcacacaataagactttggctgctcaactctatggcgagttcaaagag
ttttttcctaataatgcggttgaatattttgtctcttactatgattactatcagccagaa
gcctatgtgccttccagtgatactttcatcgagaaagatgcttctgtaaatgaacatatc
gagcaaatgcgcttgtcggcgacgaaggcgttaatggagcgtcgagactgtattatcgtc
gccacggtatcatctatatatggtttgggcgatccttcctcttatttgaaaatggtactg
catttagatcgcggcgatattattgatcagcgtggcgtattgcgccgcttggcggaatta
caatatacgcgcaatgatatggacttccatcgtgctacttatcgagtgcgaggggatgta
attgatatctttccagcggaatccgaagatgaagcagtgcgagtagaactctttgatgaa
gaaatcgaagagctcagtatatttgatccgcttactggtgaaattctacgcaaagttcca
cgtattaccatctttcccaagagtcactatgtgacgccgagagagacgctggtggatatg
atcgatgaagtaaaagccgaacttaaagagcgactcacgcaattaaaagacaataacaaa
ttggttgaggctcagcgtttagagcagcgtactcaatacgatttagaaatgattcagcaa
ttgggttattgcactggtattgaaaactactcgcgctatctatccggtcgcccacaaggg
gctgcgccaccaaccttgtttgattacttgcccgatgacgccttgatgtttattgacgaa
agccatgtgaccattccgcaatttggtgccatgtacaaaggagatcgctcgcgtaaagaa
acgctagtggagtttggtttccgtttgccgtcggcattggataatcgacccatgaagttt
gatgaatgggaagctatttcaccgcaaacgatttttgtatcagcaacaccgggtaaatat
gaagcggaatatcaagatgcggtggtagaacaagtggtgcgtccgacgggtctagtcgac
cccattgttgaggttcgacctgcgaccactcaggttgacgacgccttgggtgaaatccgc
aatcgtgttgaaaaaggtgaacgcatattaatcacagtgatgaccaaacgcatggcggaa
gacttaacggacttcttgtttgaacacgatgtacgtgttcgctacttgcacagtgatatt
gataccgttgaacgtgtagaaattattcgtgatttacgtttaggggagtttgatgtgctg
gtaggtatcaacctcttgcgtgaaggtctagatattcccgaagtgtcattagtcgctatt
ttcgatgccgacaaagaaggcttcttgcgttcagaccgatcgttaattcaaaccattggt
cgtgctgctcgtaatgttgaaggtaaagccatcctttatgcagagcgtattacggattca
atgaagcgcgccatggaagagaccaagcgtcgtcgtgaaaaacaaatcgcgtttaacgaa
gagcatggcattacaccacaaggcattaaaaagagtgttgaagatattcttgagggtgct
gtgacacctggtaagaaaatcggtcatggccgcaatcgtaaaaaagtggccgagaaaggg
gctggctatacagccgatatggaacacttgaatgtcaatgacttgaacaagcgcatcact
caggtagaagatgccatgtttaaagccgccaaagaccttaagtttgaggaagccgcgcgc
ctccgcgatgagttgcatgagctgaaggatcaattgattaaaaatagttag
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