Priestia megaterium DSM 319: BMD_1320
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Entry
BMD_1320 CDS
T01219
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bmd
Priestia megaterium DSM 319
Pathway
bmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMD_1320 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmd03019
]
BMD_1320 (rnjA)
Messenger RNA biogenesis [BR:
bmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMD_1320 (rnjA)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ADF38181
UniProt:
D5DBS0
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Position
complement(1309880..1311553)
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AA seq
557 aa
AA seq
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MKMKFVKNNQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYVIPDYS
YLVKNADKIRGLFVTHGHEDHIGGIPYLLRELNIPIYAGKLALGLLRNKLDEHGLLRTAQ
LHEITEDDVIKFRKTSVTFFRTTHSIPDSYGIVVKTPNGQIVHTGDFKFDFTPVGEPANL
TKMAEIGKEGVLCLLSDSTNSEIPNFTMSERRVGDSIHDIFRKVDGRIIFATFASNIHRL
QQVVEAAVLHNRKVAVFGRSMEAAIEIGQQLGYISCPKDTFIEPSQINRIPANRVTILCT
GSQGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVSKTIDMLFRAGAEVIHG
ALNDIHTSGHGGQEEQKLMLRLMKPKYFMPIHGEYRMQKMHIKLATDCGVPEENCFIMDN
GEVLALSDSEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKDF
KIAAGPDIISRGFVYMRESGDLINDAQSLITKHLNKVMERRTSQWSEIKNEITDTLAPFL
YEKTKRRPMILPIIMEV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaatttgtaaaaaataatcaaacggcagttttcgccctgggtggactaggc
gaaatcggtaaaaacacgtatgccgtacagtttcaagatgaaattattcttattgatgca
ggaattaaattccctgaagatgagcttttaggaattgactacgttattcctgactacagt
tatttagtaaaaaatgcagataaaatccgtggccttttcgttacacatggtcatgaagat
cacatcggcggaattccttacttattaagagaattaaacattcctatttatgcagggaaa
ttagcccttggacttcttcgcaacaaattagacgagcatgggttgcttcgtacagctcag
cttcatgaaattactgaagatgacgtaattaaattccgtaaaacatcggtaacgttcttc
cgcacaactcacagtattcccgattcttacggaattgtggtaaaaacaccaaacggacaa
atcgtacatacaggagatttcaagtttgattttacaccagtgggcgaaccggctaactta
acaaaaatggctgaaatcggtaaagaaggcgttctatgcttgctttcagacagtacaaac
agtgaaattcctaactttacgatgtctgagcgccgcgtaggtgacagcattcatgacatt
ttccgtaaagtagacggccgtattatttttgcaacgtttgcttcaaatattcaccgctta
cagcaagtagtggaagcagccgtattgcataaccgtaaagttgctgtattcggacgcagt
atggaagcagctattgagatcggccaacagcttggatatatttcatgtccaaaagatacg
ttcattgagccttctcaaattaaccgaattccagctaaccgcgtgactattttatgtaca
ggcagccaaggtgaaccgatggcagcgctatctagaattgcaaacggtactcaccgccaa
attcaaattatccctggagatacggttgtattctcatcttcacctattccaggaaataca
gtaagtgttagcaaaacaattgatatgctattccgtgcaggagcagaggttattcacggt
gctctaaacgatatccatacttctggacacggcggacaggaagagcaaaaattaatgctt
cgtttgatgaaaccaaaatactttatgccaattcacggtgagtatcgcatgcagaagatg
cacatcaaacttgcaacagactgtggagttcctgaagaaaactgcttcattatggataat
ggagaggtgctagctttaagcgacagcgaagcttcagtagccggcaaaatcccttcaggc
tctgtatatattgacggaagcggaattggtgacattggaaatatcgtacttcgtgatcgc
cgcattttatctgaagaaggtcttgttattgtggttgtaagcatcaatatgaaagacttc
aagatcgctgctggtccagacattatctctcgtggttttgtttatatgcgcgaatctggc
gacttgattaatgatgcacaatccctcattacaaaacatttgaacaaagtgatggaacgt
cgtacgtcacaatggtctgagattaaaaatgaaatcacagacacattggctccattcctt
tacgaaaaaacaaagcgccgtccaatgattttaccaatcattatggaggtttaa
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