Brevundimonas mediterranea: GYM46_00685
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Entry
GYM46_00685 CDS
T06564
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bmed
Brevundimonas mediterranea
Pathway
bmed03030
DNA replication
bmed03410
Base excision repair
bmed03420
Nucleotide excision repair
bmed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYM46_00685 (ligA)
03410 Base excision repair
GYM46_00685 (ligA)
03420 Nucleotide excision repair
GYM46_00685 (ligA)
03430 Mismatch repair
GYM46_00685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmed03032
]
GYM46_00685 (ligA)
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_00685 (ligA)
Enzymes [BR:
bmed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GYM46_00685 (ligA)
DNA replication proteins [BR:
bmed03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GYM46_00685 (ligA)
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GYM46_00685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GYM46_00685 (ligA)
MMR (mismatch excision repair)
DNA ligase
GYM46_00685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GYM46_00685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
zf-NADH-PPase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QIH71628
UniProt:
A0A6G7EE26
LinkDB
All DBs
Position
130235..132565
Genome browser
AA seq
776 aa
AA seq
DB search
MSSAIPPFPPVEDLTAETAAEELAWLAAEMARHDALYNEATPEISDADYDALRARNLAIE
TAFPDLVRPDSPSHKVGAAVSSQFAEVRHGVPMLSLDNAFDEGEVRDFVARIARFLKLPS
DEPIAFVAEPKIDGLSANLLYVDGRLTLGATRGDGRTGEDVTANLNTIADVKQTLAGDDW
PDRIEIRGEVYAPNAAFAAFNAAAEAEGRRTYANPRNFAAGSLRQKDARITGKRPLNFFA
YAWGEHSSDFAETQWEALQKLKAWGFPVNARSRRVEGAEGLIAVYRELERDRATLGYDID
GVVYKVDRLDWQRRLGFVARSPRWAIAHKFPAQQATTVLEGIDIQVGRTGSLTPVARLHP
VTVGGVVVRNATLHNEDEIERLDVRIGDTVRLQRAGDVIPQILGVVPDLRPADAVPYVFP
DKCPVCGSEAVREGDEVKRRCTGGLICDAQIVERLKHFVGRRAFDIEGLGEKQLAAFNAR
GWIKEPADIFRLARDEARLKELEREDGYGETSIRNLVAGIDARRVISLDRFLFGLGIRDI
GEQTSIVLARAFESWPALKAACLQAASGVPSDAWTALAGAHAISPRVLTLMAEATPPAAD
PWPEATMDMKISQAFPGMAAPARRSLATMTGDWSGLVELARVAREEGPSEILNQIAGVTG
VGPVAALALAHFFHEPHNLQVVAALEAELTQILDAERPKSDTPVAGKTVVFTGALERFTR
DEAKARAESLGAKVSGSVSKKTDYLVAGPGAGSKLKDAEKHGVQVLTEDEWLALIG
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgcgattccccccttcccgcccgtcgaagacctgaccgccgagacggcggcg
gaagaactggcctggctggccgccgagatggcccgccacgacgccctctataatgaggcg
acgcccgagatttccgacgccgactacgacgccctgcgcgcccggaacctggcgatcgag
accgccttccccgacctggtccgcccggactccccgtcgcacaaggtcggcgccgccgtc
tccagccagttcgccgaggtccgccacggcgtgcccatgctgtcgctggacaacgccttc
gacgagggcgaggtgcgcgacttcgtcgcccggatcgcccgtttcctgaaactgccctcc
gacgaacccatcgccttcgtcgccgagcccaagatcgacggcctgtccgccaacctcctc
tatgtcgacggccggctgaccctcggcgccacacgaggggatggccgcaccggcgaggac
gtcaccgccaatctgaacaccatcgccgatgtgaaacagaccctggccggggacgactgg
cccgaccggatcgagatccggggcgaggtctacgccccaaacgccgccttcgccgccttc
aacgccgccgccgaggccgagggccgccgcacctacgccaacccccgaaacttcgccgcc
ggctccctgcgtcagaaggacgcccggatcacgggcaaacgcccgctgaacttcttcgcc
tacgcctggggcgaacactccagcgacttcgccgagacccagtgggaggccctgcaaaag
ctcaaggcctggggcttccccgtcaacgcccgctcgcgccgggtcgagggcgccgagggc
ctgatcgccgtctatcgcgaactggaacgcgaccgcgcgaccctgggctatgacatcgac
ggcgtggtctacaaggtcgaccgcctcgactggcagcgccgcctgggcttcgtcgcccgc
agcccccgctgggccatcgcccacaaattcccggcgcaacaggcgaccacggtgctggag
gggatcgacatccaggtcggccgcaccggctccctgacgcctgtggctcggctccacccc
gtcaccgtcggcggggtcgtggtcaggaacgccacccttcataatgaagacgagatcgaa
cgtctggacgtccgcatcggcgacaccgtccgcctgcaacgcgccggcgacgtcatcccc
cagatcctgggcgtcgtccccgacctgcgtcccgccgacgccgttccatacgtcttcccc
gacaaatgcccggtctgcggctcggaggccgtgcgcgagggcgacgaggtcaagcgccgc
tgcaccggcggcctgatctgcgacgcccagatcgtcgaacggctcaaacatttcgtcggc
cgccgcgccttcgacatcgagggcctcggcgagaaacagctggccgccttcaatgcgcgc
ggctggatcaaggaaccggccgacatcttccgcctggcgcgcgacgaggcgcggctgaag
gagctggaacgcgaagacggctatggcgagaccagcatccgcaacctggtcgccggcatc
gacgcccgtcgcgtcatctcgctggaccggttcctgttcggcctgggcatacgcgacatc
ggcgaacagacctccatcgtcctggcccgcgccttcgagagctggcccgcgctgaaggcc
gcctgtctccaggccgcctcgggcgtgccgtccgacgcctggaccgccctggccggcgcc
cacgccatatcgccccgcgtcctgaccctgatggccgaggcgacgccccccgccgccgat
ccctggcccgaggcgaccatggacatgaagatcagccaggccttccccggcatggccgcc
cccgctcgccggtctctggcgacgatgacgggcgactggtccggcctggtcgaactggcc
cgcgtggcgcgcgaggaaggcccgtccgaaatcctgaaccagatcgccggcgtgaccggc
gtcggccccgtcgccgccctggccctggcccacttcttccacgagccgcacaatcttcag
gtcgtcgccgcgctggaggccgagctgacccagatcctcgacgcggaacggcccaagtcc
gacaccccggtcgccggcaagaccgtggtcttcaccggcgccctggaacgcttcacccgc
gacgaagccaaggcccgcgccgaaagcctgggcgccaaggtctcgggctccgtgtccaaa
aagaccgactacctcgtcgccggccccggcgccggctccaagctgaaggacgccgagaag
cacggggttcaggtcctgaccgaggacgaatggctggccctgatcggctag
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