Burkholderia multivorans DDS 15A-1: DM80_530
Help
Entry
DM80_530 CDS
T03292
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bmk
Burkholderia multivorans DDS 15A-1
Pathway
bmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM80_530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmk03019
]
DM80_530
03009 Ribosome biogenesis [BR:
bmk03009
]
DM80_530
Enzymes [BR:
bmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM80_530
Messenger RNA biogenesis [BR:
bmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM80_530
Ribosome biogenesis [BR:
bmk03009
]
Prokaryotic type
rRNA processing factors
DM80_530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIO76085
LinkDB
All DBs
Position
1:605635..608796
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPER
PAPSPAPQRPVEPAAAPAPAPVAQPSGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARP
ARERAEKTEQRGERGGDRNRNRRGGNGQQAQGGRDQAAAGRGQPQRQEREGKEAREPREG
REGREGRENREAREGREGREGRALREAREPRENREPREAREPRERAEQPEAVEAARGERQ
ERGERRERGERRKPQHAATLETVNRGESHPEQDADKAAAAALPGADVAADAEAGARDGEE
RRRRRRGRRGGRRERDEEGAVVDQAEAGLDGEAAAQPAAHEAPAAAEPAHANAPATVAAA
AAAGVIVAETVVEQRAESVAVETPTAPAHADSDSVAVAEPVVAAAPAAAPAPVVAPAADV
EAGPVALAVSPTDAFEVPADVEAPVAVDAQPADTAVVAEAAPAVTAPAVSAAPAVAPAPV
EAAPVEPVAAPAPAPAAAPAPAVAQPSAAPASASLEAVLQQAGLVWVNTDAEKLRAAQEA
ASRLPRPVRTPRERKPLPPVDTTPMQQVETTHR
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccggccgcgaacagcgcaaaggcaat
atctacaaaggtgtcgtcacgcgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggac
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgaaggccaggaactgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgccgccctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgagggcgacgagcgtcaggaactgcgcgaaacgatggcgcagctgcagattccg
gacgggatgagcatgatcgcccgcaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaagccgcgtcgcagagcggc
aaccccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgacatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcattcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcgcgcttccagatcgagcaccagatcgaaacggcctactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggcgacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggagtcggcgaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcacgcgtccagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgtctgcgtccggcgctgtcggaaggcagc
cacgtgacctgcccgcgctgcaacggcacgggtcacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgacacg
ccgcactacaagctcgaacgcctgcgtcacgatgacgcacgcctcgacgatccgcgcgcc
tcgtggaagatggccgaggaagcggcgcgcgaactggagtcggaaaccggctacagcaag
cgcgcggccgacgtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcaccgagcccggccccgcagcgtccggtcgagccggcagcggcaccggccccggcg
ccggtcgcgcagccgagcggcggcttcatcggctggctgaagggcctgttcggcatgtcg
cccgctccggcgcccgcaccggtcgcaccggcaccggcgaaggaacaggcggcccgtccg
gcacgcgaacgcgccgagaagaccgagcagcgcggcgaacgcggcggcgatcgcaaccgc
aatcgtcgcggcggcaacggccagcaggcgcaaggcggtcgcgaccaggcagctgctggc
cgcggccagccgcaacgtcaggaacgcgaaggcaaggaagcccgcgagccgcgtgaaggt
cgagagggtcgtgaaggtcgcgagaaccgcgaagctcgggaaggccgtgagggtcgcgaa
ggccgcgctctgcgcgaagcacgcgaaccgcgcgagaaccgcgagccgcgcgaagcccgc
gaaccgcgcgagcgcgccgagcagccggaggctgtcgaggccgcccgcggcgagcgccag
gaacgcggcgagcgtcgcgagcgcggcgaacgccgcaagccgcagcatgcggcgacgctc
gaaaccgtgaaccgcggcgaaagccatccggaacaggacgccgacaaggcggccgccgcc
gccctgccgggcgcggacgtcgcagcggatgccgaagccggcgcgcgtgacggcgaagag
cgccgtcgccgccggcgcggccgtcgcggcggtcgtcgcgagcgcgacgaggaaggcgca
gtggtcgatcaggccgaagcgggcctggacggcgaagccgccgcgcaaccggcggcgcac
gaagcgccggcggccgccgagccggcccacgcgaacgcgccggccaccgtcgcggcagcc
gctgcggccggtgtgatcgtcgccgaaacggtcgtcgaacagcgtgccgaatcggtcgcg
gtcgagacgccgacggctccggcacatgccgacagtgactccgtcgccgtcgcggaaccg
gtcgtcgccgccgcaccggctgcggcaccggccccggtcgtcgcaccggccgccgacgtc
gaagcgggccccgttgcgctcgccgtttcgccgaccgacgcgttcgaagtgccggccgac
gtggaagcgccggttgccgtcgacgcgcagccggccgacacggcagtcgttgccgaggca
gcgccggccgtgaccgctccggcagtatcggccgctccggctgtcgcaccggcgccggtc
gaagccgcaccggtcgaaccggtcgcggctccggctccggcaccggctgccgcgccggca
cctgccgtcgcccagccgtccgccgcgccggcttcggcgagcctggaagccgtgctgcag
caggcgggcctcgtgtgggtgaataccgacgcggagaagctgcgtgcggcgcaggaagcc
gcatcgcgtctgccgcgcccggtgcgcacgccgcgcgagcgcaagccgctgccgccggtc
gacacgacgccgatgcagcaggtcgagacgacgcaccgctaa
DBGET
integrated database retrieval system
