Halobacteriovorax marinus: BMS_0143
Help
Entry
BMS_0143 CDS
T01659
Name
(GenBank) putative excinuclease ABC subunit
KO
K03701
excinuclease ABC subunit A
Organism
bmx
Halobacteriovorax marinus
Pathway
bmx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMS_0143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmx03400
]
BMS_0143
DNA repair and recombination proteins [BR:
bmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMS_0143
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BMS_0143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
ABC_tran
UvrA_DNA-bind
DnaJ_CXXCXGXG
AAA_29
AAA_23
nSTAND1
AAA_16
RsgA_GTPase
HTH_60
RNA12
HydF_tetramer
Motif
Other DBs
NCBI-ProteinID:
CBW25080
UniProt:
E1X2C4
LinkDB
All DBs
Position
151278..153875
Genome browser
AA seq
865 aa
AA seq
DB search
MNHTHITIKGARTHNLKDVDVRFALNSITCIAGPSGSGKSSLVFHAILTESKRRFMNSFP
NDVKFFWDIPQSADVDEIFPVLPVWGLAQNNPVVGSRPSAFDLMGIGDVLSKMLFYLGKS
YCSSHHIPLESSVTVRGVKDFLYDQELGDKEIIHFFLASDDYLKIHGEGFYPARSFKETV
GEFEKSDPYWELFRIRTSKIESVSKKLSELGLSEVDGSILVFIPSLGLQQAFTISKNKQC
RKCGEKENIKITSPSNFSPFTPLGACVRCSGHGRNLEYDRSKIVKDDRLSLKEGAVNFLT
YSRFSHIGPVMLREAKKNGIDVTVAFKDLNQKKVWNFLENGSGQYGGLFELYDYLESKRY
KKNVRILIRSLKTEVLCEECSGTRLKSDLLKVRIPEIKKYSLRDILLFNFNELSEFIENI
KSIKDEFENWNEVKKIISTIDRTLKVALDLGLGGLLLQDKVKSLSINDYQKILLVKYLSF
EGSGSLFILDEASLSLDSTEVKVLFKYLQKLKKAENTIILVDHNDYLQSKCDELILMGPG
AGHLGGEITYQGKFKKEKLERIAEIEKRKLKRTVISGVSFNNIENKEISFASNGVTQVKG
KSYSGKKDIYIEALANIVSEVLGLEKITSKEVQFKRPKNLFDFQRVLVLNAKFNKVSSRS
TVGTMIGLAPYLRKHFASLPVSKNLNLKDGHFSPNSDLGKCTTCEGRGVLNIDMQFLEDV
QLMCDDCNGMKLKPFIATISDGYHTVHETFNLPMSEVLGNLKLTPKGKRIWEYLKLLNLD
YLSLDRPLSSLSGGEKQRLKLLSELQSKVENSLIIFEDLSFGLSRREILRLGEFVQDLCT
KGNTVILVDENEHFSDFVDEIQIFE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatactcatataactattaagggagcgagaactcataatttaaaagatgttgat
gttcgctttgctttgaattctattacgtgtattgctggtccttctggttcaggaaaatca
tctttggtttttcatgctattcttactgagtctaaaagacgcttcatgaattcatttcca
aatgatgttaagttcttttgggatattcctcagtctgcagatgttgatgagatttttcct
gttcttccggtttggggactcgctcaaaataatccagtagttggttctaggcctagtgct
tttgatttaatggggattggggatgttctctctaaaatgcttttctatttggggaaaagt
tattgttcatctcatcacattcctctggagtcttctgtaaccgtaagaggtgtcaaagat
ttcctttatgatcaggagttgggtgataaagaaattattcacttcttcttagcatctgat
gactacttaaaaattcatggtgaaggcttctacccggcaagatcttttaaagagactgtt
ggggaatttgaaaaaagtgatccctactgggagctttttagaataagaacttctaagatt
gaaagtgtttcaaagaagctttcggagttgggcctatccgaagtggatggttcaatactt
gtttttattccctctcttggacttcagcaagcattcacaattagtaagaataagcagtgc
cgaaaatgtggagaaaaggaaaatataaaaattacttcgccatcgaatttttctccattt
actcccttgggagcttgtgtgaggtgttctggtcatggacgtaatttagagtacgatagg
tccaaaattgttaaagatgaccgactctctcttaaagagggtgctgtaaactttctaaca
tattcgcgcttttctcatatagggccggtaatgcttagagaggcaaagaaaaatggtata
gatgtcactgttgcgtttaaagatttaaatcagaagaaggtatggaactttcttgaaaat
ggttctgggcaatatggtggattatttgagctctatgattacttagagtcaaagagatat
aagaagaatgtaagaatattgattcgttcacttaagacagaagtactttgtgaggagtgt
agtggaacaagacttaagagtgatcttttaaaggtaagaattcctgagattaaaaagtat
tcactaagagatattttactcttcaattttaatgaactttctgaatttatagagaatata
aagagcattaaggatgagtttgagaattggaatgaagtaaaaaaaataatttctactatt
gatcgaactctaaaggtagctctagaccttggcttaggaggactcttgttacaagataaa
gtgaagagcctctctattaatgattaccagaaaattcttttagtcaaatatttatcgttc
gaaggttcaggttctcttttcatacttgatgaggcgagcctttcactagactccactgaa
gtaaaagttctctttaaatatttacagaaactaaaaaaagctgagaataccattattctt
gttgatcataatgattacttacagagtaagtgtgatgagttgatcttaatgggccctggt
gcaggacatcttggtggtgagattacttatcaagggaagtttaagaaagaaaagctagaa
agaatcgcagaaattgaaaagagaaagcttaagaggacagtaattagcggtgttagtttt
aacaatatagaaaataaagagatcagctttgcttcaaatggtgtgactcaagttaaggga
aaaagctactctggcaaaaaagatatttatattgaggccttggccaatattgtaagtgaa
gttcttgggctagagaaaattacatcaaaagaagtacagtttaaaagacctaaaaatctc
ttcgattttcaaagagtactcgttcttaatgcaaaatttaataaggtgagctcgagatcc
acagtaggcacaatgattggacttgctccttaccttcgaaagcatttcgcatctcttccg
gtttcaaagaatttaaatttaaaggacgggcacttctctcctaattcggacttaggtaaa
tgtacgacatgtgaagggcgaggtgtattaaatatagatatgcagtttttggaagatgtt
cagttaatgtgtgatgactgtaatggaatgaagctaaaaccatttattgcaacgatttca
gatgggtatcacactgtccatgaaacatttaatcttcctatgagtgaggtgcttggaaat
ttaaaattaacaccgaaggggaagaggatttgggaatatcttaaacttttaaacctagac
tacttgagtttagatagacctctaagctcactttctggtggagagaagcaaagacttaag
ctcttgtcagagcttcaaagtaaggttgagaattcacttattatttttgaagacctatct
tttggcctttctagaagggagatcttgcgcttgggtgagtttgttcaagatctctgtaca
aaaggaaatacagtcattttagtcgatgaaaatgagcatttttcagattttgtggacgaa
attcagatttttgaataa
DBGET
integrated database retrieval system
