Brassica napus (rape): 106357580
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Entry
106357580 CDS
T04128
Name
(RefSeq) probable RNA-dependent RNA polymerase 5 isoform X1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106357580
Enzymes [BR:
bna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
106357580
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
106357580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
Motif
Other DBs
NCBI-GeneID:
106357580
NCBI-ProteinID:
XP_048593093
LinkDB
All DBs
Position
A7:605646..610511
Genome browser
AA seq
956 aa
AA seq
DB search
MITSQRSLIVLPARLETVLEKIYSKHKCPPINDDSRQRLSSIPEEIAFDLLRKAFNSPGT
SSLDRFIASKLTSSYPPPGSSRSRLSQEEIPVDYEAPSLRRRQVNGGSSLHIPPPPQLLL
ALGELEFNKAFLLLTYIPRKDLGQVEITAEEIRGWKDLSMVAFEAAVWDSLGNKFCSPTD
RRLSLECDNEKTSYYQCHVASDGSYTFKGPLLEPTGTHLHKVLGDANVLTVKFEDVPRNS
STDRYTTYRRIAKNGIMLGLRRYQFFVFKDGGKEEKKKDFSTKGVKCYFIRTDSTSANDV
GSPYIFSGKSVYEARMHFMHVHTLPSLANYMARFSLILSKTKKLEVDMTGITFEKIDDIH
CHDQNNNDVLDKNGKPCIHSDGTGYISEDLARMCPVNILKGKCLRNDNVQTPVQDPPLLI
QFRMFFDGYAVKGTFLLNKKLPPQTVQVRPSMIKVSKDPALSDFSTFDSLEVVTTSNPPK
RTKLSKNLVALLSYGGIPDEFFLDILLNTLEEYKTIFNNKRAALKAALNYGDMDDQNAAQ
MILVGIPLDEPHLKDHLSILSNTEKNDLRAGKLPVSESYYLMGTVDPTGELKEDEVCVIL
ESGQISGNVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKYGVFFPQKGPRSLGDEIAG
GDFDGDLYFISRNPELLEHFKPSEPWVSLTPPTKGNSARKPSHLSPAELEEELFDMFLKA
RFNASNVVGIAADSWLTIMDRFLVLGDENAEEKAEMKKKMLKLIDIYYDALDAPKKGAKV
FLPDELRPDIFPHYMERDQKFKSTSILGIIYDFVKSQTAEEHKPSAEISKLACFEDEPVS
DYHKKKWGQLYEKYRKEMIQAMGNKDESANEVIQRYKQEFYGAAGFEDNKKSIEELYPQA
LALYNVVYDHAIIMDNVRNCGFAWKVAGPILCRFYLEKKQGKSLLCSLPMLKELWG
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgataacttcgcagaggtcgctgatcgttcttccggctcggctcgaaaccgttttggag
aaaatatacagcaaacacaaatgtcctcccataaacgacgactcaaggcagagactttct
tcgatccctgaggagatagctttcgatttgctcaggaaagcttttaattctccgggaacg
tccagcctcgaccgcttcatcgcctctaagcttactagctcgtatcctcctcctggttcc
tctcgaagcagactttctcaagaagagatacctgttgattatgaagctccttctttgaga
agacgccaagtcaatggagggtcttctcttcacattcctcctcctcctcagctcttacta
gctttgggtgaacttgagttcaacaaggcctttctcttgcttacctacattcctcggaaa
gatctgggtcaggttgaaataactgctgaagagatcagaggatggaaggatttgtctatg
gttgcatttgaagctgcggtttgggacagtttgggaaataaattttgttccccaacagac
cgtagattgtcactggaatgtgataatgagaagactagctactaccaatgtcatgttgct
tcggatggcagttacacattcaagggccctcttcttgaacccactggaacacacctgcac
aaggtcttgggtgatgctaatgtgttgactgtcaagtttgaggatgtcccgagaaactca
tcaaccgatcgttacactacatacagaaggattgccaagaatggtatcatgcttgggtta
cgtcgttatcaattttttgttttcaaagatggtggaaaagaagaaaagaagaaagacttt
tctacaaagggagtgaaatgctacttcatacgcacagactccacgtctgctaatgatgtg
ggaagtccctacatcttctccgggaagtcagtttatgaagctcgcatgcattttatgcat
gtccacacattgccatctttggccaactacatggcaaggttttcattgattctttcaaag
accaagaagcttgaagttgacatgactgggatcaccttcgagaaaatcgatgatatacac
tgccatgatcaaaacaataatgatgttctggataagaatgggaaaccatgtatacattca
gatggcactggctacatctctgaagatcttgctcggatgtgtccagtaaacatattaaaa
ggaaaatgtctcagaaatgataatgttcaaacccctgttcaagacccgcctcttctgatc
cagtttcggatgttttttgatggctatgctgttaagggaacttttctcctaaacaagaaa
cttcctcctcagactgtccaggttcgaccttctatgatcaaggtctctaaagatccagct
ttgtcagattttagcacttttgattccctagaggttgtcacaacaagtaatccacctaaa
agaacaaagttatcaaaaaacttggttgcgctgcttagctatggaggaatccctgatgaa
ttctttctggatatattgctcaacaccctggaagagtacaaaaccatcttcaacaacaaa
cgtgctgctcttaaagctgcccttaactatggggatatggacgatcagaacgctgcacaa
atgattttggttggtatcccacttgacgaaccacacttgaaggatcatttgtctattctt
tcaaacacagagaagaatgatctcagagcaggaaagcttcctgtgagtgaatcatactac
ctcatgggtactgttgatcccaccggagagttgaaggaagatgaagtctgtgtcatcctt
gagtctggccaaatctcagggaatgtgctagtttacaggaatcctggactacattttgga
gacatacatgtacttaaggctacttatgttaaggccttggaggagtatgtaggaaactcc
aagtatggtgtcttctttcctcagaaaggtccaagatctttgggagatgagattgcaggt
ggtgattttgatggtgatttgtatttcatctccagaaatccagagctacttgaacacttc
aaaccaagtgagccgtgggtgagtttgactcctcctactaaaggcaactctgctagaaag
ccaagccatctttcaccagcggagctggaggaagagcttttcgatatgttcttgaaggca
agatttaatgctagcaatgttgtagggatagctgctgatagctggttaacaataatggac
cgcttcctcgtgctaggagatgagaacgctgaggaaaaagctgaaatgaagaagaaaatg
ttaaagctgattgatatatactatgatgctcttgatgcaccaaagaaaggtgctaaggtc
tttctcccagacgagctgaggcctgacattttcccacactacatggagcgtgatcagaaa
ttcaagtccacttctattcttggaataatctatgactttgttaaatcacagacagcagag
gaacacaaaccatcagctgagatcagtaaacttgcgtgtttcgaagatgagccagtctct
gattatcataagaagaaatggggacagttgtatgaaaagtacagaaaggagatgatacag
gcgatgggtaacaaagatgaatcagccaatgaagttatccagagatacaagcaggagttc
tatggtgctgcagggtttgaagacaacaagaaaagtatagaagaactttatccgcaagcc
ttggcactttacaacgtcgtttacgaccatgcaatcataatggataacgttcgaaactgt
gggtttgcctggaaggttgcaggaccgatcctgtgcaggttctaccttgagaaaaagcag
ggaaaatccttactgtgttcactcccaatgcttaaagagctttggggttga
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