Brassica napus (rape): 106362001
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Entry
106362001 CDS
T04128
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106362001
09124 Replication and repair
03420 Nucleotide excision repair
106362001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106362001
03400 DNA repair and recombination proteins [BR:
bna03400
]
106362001
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106362001
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106362001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
106362001
NCBI-ProteinID:
XP_013657272
LinkDB
All DBs
Position
A8:20326807..20329378
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AA seq
304 aa
AA seq
DB search
MASVASKLYSDDVSLLVLLLDTNPFFWDTTSTTFSQFLSHVLAFLNAVLGLNQLNQVVVI
ATGYSSCDYVYDSSLTSNVSSESRGTGGIPALFGSLLEKLEDFISRDAELSQGDEHVDRI
ASSLLSGSLSMALCYIQRIFRTGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVP
IDSCYIGTQNSAFLQQASYITGGVHHAPKQLGGLFQFLTTIFATDLHTRGFVQLPKPVGV
DFRASCFCHKKTIDMGYVCSVCLSIFCEHHKKCSTCGSVFGQSKLDGANASSSVNDRKRK
APDS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgttgcttctaaactgtattcagatgatgttagtctcctagtgttgttgctt
gatacgaatcccttcttctgggacactacatcgacgaccttctctcagttcctctctcat
gtgcttgcgtttctgaacgcggttttggggttgaatcagttgaaccaagttgtggtgata
gctactggttacagttcatgtgattacgtttatgactcgtctttgacatcgaatgtgagc
tctgagagcaggggaactggaggaattcctgctctttttgggtctttgctggagaaattg
gaggattttattagcagagatgcagagctttcccagggggatgagcatgtagatagaata
gcttcttctctcttgtctggatcgctctccatggctctttgctatatacagaggattttc
cgtactggacatcttcatccccagcctcggattttatgcttgcaaggttccccagatggc
ccggaacaatatgtagctgtgatgaactctatcttctctgcccaacgcctaatggttccc
attgattcctgttacataggtacacagaactcagcatttttgcagcaggcatcttatata
accggtggagtacatcatgcacctaaacagttgggtgggctgtttcagtttctaacgact
atctttgcaactgatttgcacacccgcggttttgtacaacttcctaaacctgtaggagtt
gattttcgagcatcgtgtttttgccacaagaagactatagatatggggtacgtatgttca
gtgtgtctgtcaattttctgtgagcatcacaagaaatgttcaacgtgcgggtccgttttt
ggtcagtctaaacttgatggtgccaatgcttcatcatctgtcaatgataggaagagaaaa
gctcctgattcctaa
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