Brassica napus (rape): 106393558
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Entry
106393558 CDS
T04128
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106393558
09124 Replication and repair
03420 Nucleotide excision repair
106393558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106393558
03400 DNA repair and recombination proteins [BR:
bna03400
]
106393558
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106393558
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106393558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
106393558
NCBI-ProteinID:
XP_013689707
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Position
A2:9942673..9947366
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AA seq
593 aa
AA seq
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MSDWQVKYKSSLKDRGTEGILKLREGILLFVPNDPTSDSKLKVLTPNIKSQKYTKEGSKK
PAWLNLSNKQGDSHIFEFQNYQDMHACRALITKALAKCEEEQPKKPAAVLTSAEQLSIAD
LELRFKVLRENIELQRLHKEFVETKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVS
GIKPSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLY
STKNTAVAAAEAAEDEELAVFLKPDEILAQEARQKIRRVDPTLDMEADQGDDYTHLMDHG
IQRDGTMDVVEPQNGQFRRSLLQDLNRHAAVVLEGRNIDVDSENTRSVAEALARVKQVSK
ADGETTKDANQERLARMSRLAEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVVNEPRGA
GTLKRNVHEAYGSLKESILEIRTKGLRDPLIKPEVAFEVFRSLTQTISTAKNIIGKNPRE
SFLDRLPKSTRDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNSYSQLEAM
KESVQSELRHQLSLLVRPMQQALDAAFQHYDADLQRRTAKSARGSAGEANGSV
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactggcaagtgaaatacaagagctctctgaaggatcgaggaactgagggaatc
ctcaaattaagggaagggatactgctcttcgttccaaatgatcccacctctgattcaaag
cttaaagtcctcactcccaacatcaaaagtcaaaaatatactaaagaaggatcaaaaaaa
cctgcttggctcaatctctccaacaagcagggagacagtcatatctttgagtttcaaaat
tatcaggacatgcatgcttgccgtgctctcatcactaaggccctagccaaatgtgaagag
gagcagcctaagaaaccagctgctgtcttgacctctgctgagcaactcagtattgctgac
ttggagctacgcttcaaggttcttcgagaaaatattgagttgcagagattgcataaggaa
tttgttgaaactaaagtcctgactgaagatgaattctgggctactaggaagaaactactg
ggtaaagattccatcagaaagtcgaagcaacaggtcggactgaagagcatgatggtttcc
ggcatcaaaccttctactgatgggcggactaatagggtgacgttcaacttaacctctgag
ataatttttcagatttttgctgagaagccagctgttcggcaggcattcattaattatgtt
ccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatatctttac
agcaccaaaaatacagcggtagctgcagcagaagctgctgaggacgaggaactcgctgtc
tttctaaagcctgatgagatattggctcaggaagctcgtcaaaagatcagacgggttgat
ccaactcttgacatggaagctgaccagggagatgactacactcatcttatggaccacggg
atccagcgagatggcaccatggatgttgttgaacctcagaatggtcagtttagaagatca
cttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcaggaacattgatgtt
gattcagaaaacacaaggagtgttgcagaggcgctcgcacgggttaaacaagtaagcaaa
gctgatggtgaaaccactaaagacgctaatcaggagagattggcgagaatgtcccgtttg
gctgaaatggaggatcttcaagcaccgcagaatttcccgttagcaccgctctctatcaag
gaccctcgtgattactttgaatctcaacaaggaaacgtcgtcaatgaacctagaggagca
gggacattaaagagaaatgttcatgaagcttacggatcgttaaaagaatccattttggag
attagaacgaaagggttaagggatccgttgattaaacctgaagttgccttcgaggttttc
aggtcattaacccaaactatctccaccgccaaaaatattatcgggaagaacccgcgagag
agctttctggacagattgccgaagtccactagagacgaggttttacatcattggacatca
atacaagaattacttaaacatttttggtcatcttacccgataacaaccacatatcttcat
accaaagtagggaagctgaaggatgcaatgtccaatagttattcacaactcgaggcaatg
aaagagtcggtgcaatcggaactccgccatcagctttctctactagttcgtccaatgcaa
caggctcttgatgctgcgttccaacactacgatgctgacttgcagagaagaaccgctaag
agcgccagaggtagcgccggcgaagcaaacgggtctgtttag
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