Brassica napus (rape): 106396318
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Entry
106396318 CDS
T04128
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106396318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106396318
Enzymes [BR:
bna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106396318
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106396318
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106396318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
Motif
Other DBs
NCBI-GeneID:
106396318
NCBI-ProteinID:
XP_013692126
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Position
A9:complement(36420431..36423768)
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AA seq
601 aa
AA seq
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MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKSAATEDVPESSPLEGYFLRYRWFRVQSDK
KVTICSVHPTEQATLQCVFCSKRPALVSKSYHCSPKCFTDAWQHHKTLHERAAAENGNNE
EDNNNNNNNDLSRANSAASGVLASTLSSLNGPPTPFYPSSIAQKNGGETLVEVGGCKTYT
PTADDIGYVLKFECVVAVAESKQSVGHPSTIMTSRVIPAPSPRPRRLIPVNGADVVGGHL
DQDGRIQSAGSFTVLSYNILSDTSASSELYSYCPTWALSWPYRRQNLLREIVAYRADVVC
LQEVQSDHFHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFAHVKKYD
VEFNKAAQSLTEAIIPPAQKRSALNRLVKDNIALIVVLEAKFGNHQPTDGKRQLICVANT
HVNVQQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHSLLVYGKVDPQ
HPDLLVDPLGILRPQTKLTHQLPLVSAYSSFVRSVMGIGLEQHRRKMDLNTNEPLFTNCT
RDFIGTHDYIFYTADTLMVESLLELLDEDGLRKDTALPSPEWSSSHIALLAEFRCMPRTR
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgtgatccgagttcacctcccttccgaaattcccatcgtgggctgcgagcta
accccttacgtcctcgtccgccgccccgataagtccgccgccaccgaagatgtccctgag
tcttcccccctcgaaggctacttcctccgttacagatggtttcgtgtacagagcgataag
aaagtaacgatctgcagcgtccacccaacggagcaagccactttgcaatgcgtcttctgc
tcgaagcgaccagctctcgtctccaaaagctaccactgctctcccaaatgcttcaccgac
gcgtggcagcaccacaagactctgcacgagcgtgccgccgctgagaacgggaacaacgaa
gaagataataataataataataataatgacttgtcacgtgccaacagtgctgcctctggt
gtcctcgccagcaccttgtcgagtctcaacggcccaccgacgccgttttatccttctagc
atcgcgcagaagaacggaggagagacgctggtcgaggtcgggggttgcaagacgtacacg
ccgacggctgatgatattggatacgtgttgaagttcgagtgtgtggtggctgttgctgag
agtaagcagtctgtggggcatcctagtacgattatgacttcgcgtgtgattcctgctcct
tctccgaggccacggaggctgatccctgttaatggagctgatgtggtgggtggtcacttg
gatcaagatggtcggattcagtctgcagggtcgttcactgttctttcttacaatatattg
tctgatacttctgcgagtagcgagctttatagctattgtcctacttgggctctttcttgg
ccgtatagaaggcagaatttgttgagggagattgttgcttatcgagctgatgttgtctgc
cttcaagaggtacaaagtgatcatttccatgaaatttttgctccggagttggataagcat
gggtatcaagctctttacaagaggaagactaatgaggttctcagcggaagtacaagtgca
attgatggatgtgcgacatttttcagaagggatagatttgcacatgtcaagaaatatgat
gttgaattcaataaggctgctcagtctttgactgaggctatcatccctcctgctcagaag
agaagtgctttaaaccgacttgtgaaggataacattgcgttgatagttgttcttgaagcg
aagtttggtaatcatcaacctactgatgggaagcgccagcttatctgtgtggcaaacaca
catgttaatgttcaacaagagctgaaggacgtgaagctctggcaggttcatactttatta
aagggactggagaaaatagctgctagtgctgatattcctatgcttgtatgtggagacttc
aatactcttcccggaagtgctcctcattcacttcttgtatatggaaaggttgatccacag
catccagatctattggttgatccacttgggatcttgcgtcctcaaaccaaactgactcat
caactgcctctggtgagtgcgtactcatcgtttgtgagatcagtaatgggtattggattg
gaacaacacagaaggaaaatggatcttaatacaaacgagcctttgtttaccaattgcaca
agggacttcattggcactcatgactatatattttatacagcggatacgttaatggtggag
tctttattggagttgctagatgaagatggattgagaaaggatacagctcttccttccccg
gaatggtcttctagtcacattgcactcttagctgagtttcgatgcatgcctaggaccaga
cgctaa
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