KEGG   Brassica napus (rape): 106402844Help
Entry
106402844         CDS       T04128                                 

Definition
(RefSeq) DNA ligase 6-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106402844
   03410 Base excision repair
    106402844
   03420 Nucleotide excision repair
    106402844
   03430 Mismatch repair
    106402844
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106402844
   03400 DNA repair and recombination proteins [BR:bna03400]
    106402844
Enzymes [BR:bna01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106402844
    6.5.1.6  DNA ligase (ATP or NAD+)
     106402844
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106402844
DNA replication proteins [BR:bna03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    106402844
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     106402844
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106402844
   NER (nucleotide excision repair)
    Other NER factors
     106402844
   MMR (mismatch excision repair)
    Other MMR factors
     106402844
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C RMMBL Lactamase_B_2 T4_Gp59_C
Motif
Other DBs
NCBI-GeneID: 106402844
NCBI-ProteinID: XP_013699098
LinkDB All DBs
AA seq 1402 aa AA seqDB search
MDALIASPVTVVVSISRKSGEENRKIPKPSDFGATSSSSMASDSAGDFPNDGNAETLNLN
STELYSSAVSSSVPTPSLKPPFSPLSIPQSNRIPKTNFTVDFFRSSSSVAFFLSHFHSDH
YSGLSSSWSRGIIFCSHITARLLKQILQVPSQFVFPLPTNQKVIIDGSEVVLIDANHCPG
AVQFLFKTKDGSERYIHTGDFRFCDSMRSDPFLGGFVGCDGVFLDTTYCNPKFVFPTQQE
SVDYVISAIDKIDEMNKKVLFLVATYVVGKEKILIEIAKRCNRKIFVEARKMSILNVLGC
GESGMFTEDKEESHVHVVGWNVLGETWPYFRPNFVKMNEIMVEKGYDKVVGFVPTGWTYE
VKRNKFAVKVKDSMEIHLVPYSEHSNYDELREYIKLLKPKTVIPTVGVDVEKMDSREVYK
MQKHFSGLVDEMANKKEFLLGFYRQSDKKSEKADMDVSEENDAPRSDSSVTEKLLIELRD
SLPDWVSEEQMLDLIKKHAGNPVDIVSNFYECEAELYKQSFLATSSLENQAVLIDDDGID
LQPNPAKSTSSDCQASQKGFALPSKVDLTKATVSPGKRSKSIGNKSNKKAKKDPKLKPVG
PGQSTITKFFDKVLDSGSTSAGVGLETEECNTDEKMVHNDAKEAYKEVTDQFIDIVHGSE
SLREYAASIIDEAKGDINRALDIYYSKPSEIPGEHAGEGGGGLSSKSNQFPQCPEACSSQ
ENKKTSQKSGLALNLCEQKSAEEMVDNDYVSLPPEKYKPKEHACWRDGQPAPYIHLVRTF
ASVEGERGKIKAMSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENIELNIGGSLISS
ALEEACGISRSTMREMYNRLGDLGDVAQLCRQTQKLLVPPPPLLVRDVFSSLRKISVQSG
TGSTRQKKNLIVKLMRSCREKEIKFLVRTLSRNLRIGAVLRTVLPALGRAVVMNSFWNCH
NKEASESCFREKLEGVSAAVVEAYNILPSLDVVVPSLMDKDIEFSTSTLSMIPGVPIKPM
LAKIANGVQDFIKLFQDKAFTCEYKYDGQRAQIHLLLDGTVRIFSRNGDETTSRFPDLVD
VIKQFACPTAETFILDAEVVATDRKSGNKLMSFQELSTRDRGSKDALITTKSIKVEVCVF
VFDIMFYNGEQLLALPLRERRKRLKEVSPETRPGYLEHAKEISVEAEESSMNNQETLCRI
NAFLEEAFQSSCEGIMVKSLDVDAGYCPTKRSDSWLKVKRDYVDGLGDTLDLVPIGAWHG
NGRKAGWYSPFLMACYNPETEEFQSVCRVMSGFSDAFYIEMKEFYPEDKILAKKPPYYRT
GETPDMWFPAEVVWEIRGADLTVSPVHSAALGLVHPSRGISVRFPRFICKRVDRNPEECS
TAADIAEMFHAQTRKMNIKSQH
NT seq 4209 nt NT seq  +upstreamnt  +downstreamnt
atggatgctcttatagcaagcccggttacagtggttgtgtcaatttctcgaaaatcaggc
gaagagaaccgtaaaatccctaaaccatcggattttggcgccacttcatcttcctccatg
gcgtccgactccgccggcgacttcccaaacgacggcaacgcagaaaccctaaacctcaac
tctacagaactctactcatcagcagtttcctcctccgttcctacaccctccctgaaacca
ccgttctctcctctctcaatccctcaatcaaaccgaatccccaaaactaacttcaccgtc
gacttcttccgctcctcctcctccgtcgctttcttcctctcacacttccactccgaccac
tactccggcctctcctcttcctggtcccgaggaatcatcttctgctctcacataaccgcg
cgcctcctcaaacaaatcctccaagtcccgtcgcagttcgtcttccctttacctacgaat
caaaaagttatcatcgatggctccgaggttgttctcatcgacgcgaatcactgcccagga
gctgtacagttcctcttcaaaaccaaggatggttccgaaaggtacattcacaccggagat
ttcagattctgcgattcgatgagatcagatccgttccttggtggcttcgttggctgcgac
ggtgttttcctcgacactacttattgcaaccctaagttcgtattccccacgcagcaagag
tctgttgattatgtgattagcgcgatagataagatcgatgaaatgaataaaaaagttttg
tttcttgttgcgacttacgttgttggtaaagagaagattttaattgagattgctaagaga
tgcaataggaagatctttgtggaggcgaggaagatgtcgattttgaatgttttggggtgt
ggagagagtggaatgttcactgaggataaggaagagagccatgttcatgttgtgggatgg
aatgtgttgggtgagacttggccgtattttcgtcccaatttcgtgaagatgaatgagatt
atggttgagaaagggtatgataaggttgtaggttttgtccccacggggtggacttatgag
gtgaagaggaataagtttgcggtgaaggttaaagattctatggagattcatcttgttccg
tatagcgagcattcgaattacgatgagcttagggagtacatcaagttgttgaaacctaaa
acagttattcctacggttggtgttgatgtcgagaagatggatagcagggaggtttataaa
atgcagaagcatttttctggattggtagacgaaatggctaacaagaaagagtttttattg
ggtttctatcgacagtctgacaagaagagtgagaaggctgacatggatgttagcgaagaa
aatgatgctccaagaagtgattcttcggtgactgaaaagttgctgatagaactacgtgat
tctttgcctgattgggtcagtgaagagcagatgttagatctgattaagaaacatgctggt
aaccctgtagatatagtaagtaacttctatgaatgcgaagcagagctttacaagcaatcc
tttcttgccacgtcttccttggagaatcaggctgttttgattgatgacgatggaatcgac
ttgcaaccaaatcctgctaagagcacttcgtcagattgtcaagcaagtcaaaaaggtttt
gccttaccaagcaaagttgatttaacaaaggctactgtttctcccgggaaaagaagcaaa
agcattggcaataagtcgaacaagaaggccaagaaagatccaaagttaaaaccagttggt
ccagggcagtcaaccataactaaattcttcgataaggtgttggatagtggatctacttct
gctggtgttggtttagagactgaagaatgcaatacagatgaaaagatggtccacaatgat
gctaaagaagcatacaaagaagtaacagatcaatttattgacattgttcatggttctgag
tctttaagagagtatgctgcttccatcattgatgaggctaaaggagatataaatagggca
ctggacatctattatagtaaacccagtgaaatacctggtgagcatgcaggtgagggagga
ggaggactctctagcaaatcaaatcagtttccgcaatgtccagaagcgtgctcctcccag
gagaacaaaaagacgtcacaaaaatcaggacttgcattgaacttatgtgagcagaaatca
gcagaagaaatggtggacaatgattatgtatctctaccgcctgaaaaatataagcctaaa
gagcacgcttgttggagggatggacagcctgctccatatatccaccttgtccggacattt
gcttccgttgaaggtgaaagaggcaagatcaaagctatgtctatgctttgcaacatgttt
agaagcttgttggctctctctccagaagatgtgctgcccgctgtttatctttgcacaaat
aagattgccgctgaccatgagaatattgagcttaacattggtggaagtctaatctcctct
gcattggaagaagcatgtggaataagtcggtctactatgagggagatgtataatagattg
ggggatcttggggatgttgctcagctatgccgacaaacacaaaaactactggttcctccc
ccaccacttctagttagagacgtgttttcaagtctacggaagataagtgtgcagtcaggt
actggaagtactagacaaaagaaaaacctcatcgtgaagctaatgcgctcttgcagagag
aaagagatcaaatttttagttagaacattgtcccgtaatttaaggattggcgctgtgttg
agaactgttctgcctgcactagggcgagcagtagttatgaattctttctggaactgccat
aacaaagaagcatcagaaagttgtttcagagagaaactcgagggcgtttctgctgcagta
gttgaggcctacaatatacttccttctctggacgtggttgttccttctctcatggacaaa
gacattgagttttcaacatcaactctgtcaatgatcccaggggtacctataaaacccatg
cttgcgaaaattgctaacggggttcaagactttatcaagctcttccaagataaggctttt
acatgcgaatacaaatatgatggtcagcgcgcccagatccatttgttacttgatggtact
gttcgcatcttctctcgaaacggggacgaaacaacttccagatttccggatctggttgat
gttattaaacagtttgcttgccctactgctgagacattcatattggacgcagaggtggtt
gcaactgatagaaagagtggcaataaactcatgtcatttcaagagttatcaacaagagat
agagggagcaaagatgctttgataactacaaaaagtattaaggttgaagtctgcgtcttt
gtgtttgatattatgttctacaatggtgaacagctcttggctcttcccctccgtgagaga
cgaaaacgtctaaaggaagtctcccctgagactaggccaggctatcttgagcatgctaaa
gaaatctctgtggaagcagaagaatcgtctatgaataaccaagaaactttgtgtagaata
aatgcgtttctagaagaagcatttcagtcatcttgtgaaggaatcatggttaagtctttg
gatgttgatgccggttactgccccacaaagcgttctgattcatggctcaaggtcaagcga
gattatgtagatggattaggtgacacattggatttagttcctataggtgcctggcatggc
aacgggagaaaagcgggatggtatagtccattcctaatggcctgctacaaccctgagacc
gaggagttccagagtgtctgccgtgtcatgtctgggttttctgatgccttttacatcgag
atgaaagaattctaccccgaggataagatccttgcgaaaaagccgccatactacagaaca
ggggagacaccagacatgtggtttccagcagaggttgtttgggaaatcagaggtgcggat
ctaaccgtctcacctgttcacagtgcggccttaggtctggtccatccatcacgaggcatc
tccgttaggtttccgagattcatctgtaaaagggtggataggaatccggaggaatgcagc
acggcggcagatatagcagagatgtttcatgctcaaaccagaaaaatgaacatcaagtct
caacactaa

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