KEGG   Brassica napus (rape): 106420229Help
Entry
106420229         CDS       T04128                                 

Definition
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106420229
   03410 Base excision repair
    106420229
   03420 Nucleotide excision repair
    106420229
   03430 Mismatch repair
    106420229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106420229
   03400 DNA repair and recombination proteins [BR:bna03400]
    106420229
Enzymes [BR:bna01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106420229
    6.5.1.6  DNA ligase (ATP or NAD+)
     106420229
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106420229
DNA replication proteins [BR:bna03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    106420229
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     106420229
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106420229
   NER (nucleotide excision repair)
    Other NER factors
     106420229
   MMR (mismatch excision repair)
    Other MMR factors
     106420229
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 106420229
NCBI-ProteinID: XP_013716539
LinkDB All DBs
AA seq 803 aa AA seqDB search
MLAIRSSNHFRCISSLCTKTRFSSVLVSLNRQVSPFPSSSRLHHRAMSSSRPSAFDALMS
NARASAKKKTTPQASNSSPSPNKRKISKTQDADSPKAEAFSDSPKPRSDSPSIAEDLKKG
AKTQDADLTKVEAFPDSDKPRSSIAKKSRTLSQTDKVDELKSRIVLLKRKPGEFDPERVA
CWEKGERVPFLFVALAFDLVSAESGRIVITDILCNMLRTVIATTPDDLVAAVYLAANEIA
PAHEGVELGIGEGSIIKAISEAFGRTEAQVKKLNTELGDLGLVAKGSRSSQTMMFKPEPL
TVVKVFNTFRQIAKESGKDSTEKKKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTV
LAALGQAAVYNEEHSKPPPKTKSPLEEAAKIVKQVFTVLPVYDIIVPALLTGGVWNLPKT
CNFTLGVPIGPMLAKPTKGVGEILNKFQDTVFTCEYKYDGERAQVHCMEDGTFEIYSRNA
ERNTGKYPDVALALSRLKKPSVKSFIVDCEVVAFDREKKKILPFQILSTRARKNVNVNDI
KVGVCIFAFDMLYLNGQQLIQENLDIRREKLYGSFEEDPGYFQFATALTSSDIDEIQKFL
DASVDIGCEGLIIKTMNSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKR
TGVFGAFLLACYDADKEEFQSICKIGTGFSEAVLEERSTSLRSRVIPTPKQYYRVGDSLN
PDVWFEPTEVWEVKAADLTISPVHRAANGIVDPDKGISLRFPRLLRVREDKKPEEATSSE
QIADMYQAQKHNHPSNEAKGEDD
NT seq 2412 nt NT seq  +upstreamnt  +downstreamnt
atgttagcgattcgatcatcgaatcacttccgatgcatttcttctctctgcactaaaact
cgattctcctccgtattagtctctctcaatcgccaagtttccccctttccctcctcctcg
cgcctccaccacagagcaatgtcttcttctcgcccctctgcattcgacgctctcatgtcc
aacgctcgcgcttccgccaagaagaaaacgactccccaagcttccaattcatctccctcc
ccgaacaaaagaaaaatctcgaaaacccaagacgccgattcgccaaaggcggaagctttt
tccgattcccccaaacccagatcagattcgccgtcaattgcggaagatttgaagaaggga
gcgaaaacccaagacgccgatttgacaaaggtggaggcttttcctgattcggataaaccc
agatcgtcaattgcgaaaaagtctaggactttgagtcagacggataaagtcgacgaattg
aagagtaggattgtgttgctgaagaggaagcctggcgaattcgatccggagagagtggcg
tgttgggagaaaggggagagagttccgtttctgtttgtggcattggcgtttgatttggta
tcagctgagagtgggaggattgtgattactgatattttgtgtaacatgttgaggactgtt
attgccaccactcctgatgatttggtcgctgctgtttatcttgcggcgaatgagattgct
cctgctcatgaaggggttgagttggggattggtgaaggttctattattaaggccatctct
gaagcttttggtagaactgaggcgcaggttaagaagcttaatacggaactgggagacttg
gggcttgtagcaaaaggaagccgatcgtctcagactatgatgttcaagccagaaccattg
actgttgtcaaggttttcaatacttttcgacaaattgctaaggaaagtgggaaagatagt
acagaaaagaagaaggatcgtatgaaggcacttcttgtggcagcaacagactgtgaacct
ctctacttaactcgtttacttcaggcgaaattgcggttagggttctcaaatcagactgtc
ttagctgccttgggacaagcagctgtttataatgaagaacactcaaagccacccccaaaa
accaagtctcctttagaggaggctgcgaagatcgttaaacaagtattcactgtacttcct
gtttatgacattattgttcctgctcttctaactggtggtgtatggaatcttcctaaaact
tgtaacttcacacttggtgtacctattggaccgatgcttgcaaaaccaacaaaaggtgta
ggcgagatacttaacaagttccaggacacagttttcacatgcgaatacaaatatgatgga
gaacgtgcacaggtacattgtatggaggatggtacattcgagatatatagtcgaaatgct
gaaaggaacaccgggaagtaccctgatgttgctcttgcgttatctaggttaaagaagccc
tctgtgaaatcttttatcgtggattgtgaggttgttgctttcgatagggagaaaaagaag
attcttccgtttcagattttgagcacacgagcgcgtaagaatgtgaacgtcaatgatatc
aaagttggcgtgtgcatctttgcttttgacatgttgtatctaaatggccagcaacttatc
caggagaatcttgatattcgccgagagaagctgtacggatcatttgaggaagatcctgga
tatttccagtttgcaactgctctaacatccagcgatatcgatgaaatacaaaagtttctc
gacgcttctgttgacattgggtgtgaagggttaatcattaaaacaatgaattcagatgcg
acatatgagcctgcaaagcgatcgaataattggttaaaactgaagaaagactatatggac
agcattggggactctgtggatcttgtaccaattgctgctttccatggacgtggcaaacgc
acaggtgtctttggtgcatttttactagcttgctatgatgctgataaggaagagttccag
agcatttgtaaaataggtactggattttctgaagctgtgcttgaagaacggtctacgagt
cttcggtccagagtgattcctactccaaaacaatactaccgagttggagacagcctcaat
ccagatgtttggtttgagcccactgaggtctgggaagtgaaggcagctgacttgacaatt
agccctgtacatcgtgcagctaatggaattgtggatcctgataagggaatttctctgcgt
tttcctcgtctgctccgtgtacgggaagacaagaagccagaagaagcaacatcatctgaa
cagattgctgatatgtaccaagctcaaaaacacaaccatccaagcaatgaagccaaaggt
gaagatgattga

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