Brassica napus (rape): 106429361
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Entry
106429361 CDS
T04128
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106429361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106429361
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
106429361
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Acid_PPase
Motif
Other DBs
NCBI-GeneID:
106429361
NCBI-ProteinID:
XP_013725566
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Position
A8:complement(3612802..3616256)
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AA seq
681 aa
AA seq
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MARNREGLVLLVDIGPAMHSVLPDVEKTCSLLMQKKLIYNKFDEVGIVVFGTQETENELA
RDIGGYENIKVLRNIKVVDELVVDLVKRLPRGPVAGDFLDALIVGMDMLIKMYGAGQKGK
KRLCLITNAACPTKDPFEGTKDEQVSTIAVKMAAEGIKMESIVMRADASGDVDERIIEEN
DHLLTLFSTNAIAKTVYVESPLSLLGSLKTRRVAPVTLFRGDLEINASMKIKVWVYKKVA
EERLPTLKMYSDKAPPSDKFAKHEVKIDYDYKVTAETSEVLAPEERIKGFRYGPHVIPIS
PDEMETLKFKTEKGMKLLGFTDASNILRHYYMKDVNIVVPDPSKEKSVIAVSALAREMRQ
TNKVAIVRCVWRNGQGNVVVGVLTPNVSERDDTPDSFYFNVLPFAEDVREFPFPSFSRFP
ASLKPDEQQQAVADNLVKMLDLAPSPKEEVLKPELTPNPVLQRFYEYLELKSKSTDAALP
PMNEAFKRIMEQDPELSSSNKSIMDSFSGSFEVKENPKLRKASKRLLRDKPSGSDDEDNR
MITYNANENSIDTVGDANPVQNFEAMMSRRDGSDWTDKAISEMKKRIVKLVEDSTTDEGD
KALECLLSLRKCCVLEQEPKQFNEFLNHLYELCQEKKLSHFLEHFTSKKITMIPKSEAAD
SDVADEEAADFAVKQEPKFET
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtaaccgggagggtttggttttgttggtggatataggccctgccatgcatagt
gtactccctgatgtcgaaaagacatgttctttgctcatgcaaaagaagttgatttacaac
aagtttgatgaagttggaattgttgtctttggaactcaagaaaccgaaaatgagcttgct
agggacataggtggatatgagaacattaaggtgttaaggaacatcaaagttgttgatgaa
ctcgtggttgatcttgtaaagcgtctccctcgaggacctgtagctggcgactttcttgat
gctttgattgttgggatggatatgcttataaagatgtatggtgctgggcaaaaagggaaa
aagcggttgtgtctcatcaccaatgcagcttgtcctaccaaagatccatttgaagggacc
aaagatgagcaagtcagtaccattgctgtgaaaatggctgcagagggtataaagatggaa
agcattgttatgagggctgatgcaagcggtgatgttgatgagaggataatagaggagaat
gatcatttgttgactttgttctccaccaacgccattgcgaaaacagtgtatgttgagagt
ccactctcactgctaggttccttaaagacccggagagttgctcctgttactttgttcaga
ggtgatcttgagattaacgcatcaatgaagatcaaggtgtgggtttataagaaagtcgct
gaggagagacttcctacgctaaaaatgtattctgacaaggcccctccaagtgacaagttt
gctaaacacgaagtgaagatcgattatgattataaagttaccgcagagactagtgaagtt
cttgctccagaagaaaggatcaagggctttcgctatggacctcatgtcattcctatctca
ccggatgagatggaaacactcaagttcaaaactgaaaagggcatgaagcttcttggattc
actgatgcatcaaacatactccgacattattacatgaaagacgtgaacatagttgttcca
gacccgagcaaagaaaaatctgtgattgcagtctctgcgcttgcaagagaaatgaggcaa
acaaacaaggtggcaattgtacgttgtgtctggagaaacggacaagggaatgtagttgtt
ggggtcctcactccgaatgtgtctgaacgagatgacacccctgattctttctacttcaac
gtgctgcctttcgccgaggatgtccgcgagtttccgtttccttctttcagtagatttcct
gcgtcgttgaagcctgatgagcaacagcaagcggtggctgataacttggttaagatgctt
gaccttgcaccttctcctaaagaggaagtgctaaagcctgagcttactcctaacccagtt
ctgcagcgcttttatgaatacctcgagttgaaatcaaaatccacggacgctgctttacct
ccaatgaatgaagctttcaagaggattatggagcaggatccagaactctcttccagcaat
aaatctataatggattcttttagtggaagttttgaagtgaaagagaacccaaagttgaga
aaggcttctaagagattgttaagggataagccatctggttcagatgatgaagacaatcgc
atgattacttataatgccaatgagaacagtattgacacagttggagatgcaaacccggtt
caaaattttgaagctatgatgtctcgtagagatggcagtgattggactgataaagcaatc
agtgagatgaaaaaacggatagtgaagctggtggaagatagtaccaccgatgaaggtgat
aaagcattggaatgtttgctctctttacgtaaatgctgcgtcttggaacaggagccaaag
cagttcaatgagttcttgaaccatctatacgagttatgccaagaaaagaagttgtctcat
tttcttgaacattttacgtccaagaagatcacaatgattcccaaatcagaagcagcagac
agtgatgtggctgacgaggaggctgcggatttcgccgtcaaacaagagccaaagttcgag
acctaa
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