Brassica napus (rape): 106447548
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Entry
106447548 CDS
T04128
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106447548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bna03400
]
106447548
Enzymes [BR:
bna01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
106447548
DNA repair and recombination proteins [BR:
bna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
106447548
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
DUF2458
PPP4R2
Motif
Other DBs
NCBI-GeneID:
106447548
NCBI-ProteinID:
XP_013744950
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Position
A4:20297579..20300660
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AA seq
489 aa
AA seq
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MNKVLQLGLQSSVVQAAKFLVVVPFRSLRFGSSIVSVRVGTSSFNKRLMSNATSKSVPLS
INNSKGKPMKRSDNDIEAMTVQELRATLRKLGLPVKGLKKELISTLKLHMDNSSQDESSG
AEKMETTSSTLSESVTIKRKTRNQEEADDDYYGNDNGEKKVKQSTEKNLKVKVSSKEEEA
SLTIVVSSSNQSEPWTVLAHKKPEKDWKAYNPKTMRPPSLPEGTKSVKIMTWNVNGLRAL
LKLESFSALQLAQREDFDVLCLQETKIQVKDVEEIKKALIEGYDHSYWSCSVSKLGYSGT
AIISRIKPLSVRYGTGLSGSDHDTEGRIVTAEFESFYLINTYVPNSGDGLKRLSYRVEEW
DRTLSNYIKELEKTKPVVLTGDLNCAHEEIDIYNPAGNKRSAGFTIEERQSFGENFLEKG
FVDTFRKQHPGVVGYTYWGYRSGARKTNRGWRLDYFLVSESIAGNVHDSYILPDISGSDH
CPIGIILKL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggttcttcagttaggtctccagagctccgtcgtccaagccgccaagtttctg
gtggtggtgccctttaggagcttaagatttggttcatcaatcgttagtgttagagtagga
acaagcagtttcaacaagaggcttatgtcaaatgctacatcaaagtctgtacctttatcc
atcaacaacagcaagggaaagccaatgaagcgaagtgataatgacattgaggcaatgacg
gttcaagaacttagagccacattgaggaaacttggactacctgtgaagggactcaaaaag
gaacttatctcaactttaaaacttcatatggacaacagttcacaagatgaaagttctggt
gcagagaaaatggagaccacttcatccaccctttcagagagtgtcactatcaaaagaaaa
accagaaaccaggaagaggctgatgatgattattatggcaatgacaatggagagaagaaa
gttaaacagtccactgagaaaaacttgaaagtgaaagtttcttcaaaagaggaagaagca
tcactgaccattgtcgtctcatcctccaatcaaagtgaaccgtggacggtacttgctcat
aagaagcctgagaaagactggaaagcttataacccaaagacaatgagacctccttctcta
ccagaaggcaccaagtctgtgaagattatgacttggaatgttaatggactgagagcattg
ttgaagttagagagcttctctgctcttcagcttgcacaaagagaagatttcgatgtgttg
tgcttgcaggagactaaaatccaggtgaaggatgttgaggagatcaagaaagcacttatt
gaaggctatgatcatagttactggtcctgcagcgtctcaaaacttggttactctggaact
gctattatctcacggataaaaccactctcggttagatatggtactggtctatctggatca
gaccatgacacggaaggacgcattgtgactgcagagtttgaatcattctacttgataaac
acttatgttcctaactctggagatggcttgaaaagactgtcatacagggttgaagaatgg
gatcgaaccctcagcaattacatcaaagagctggagaagactaaacctgtagtcttgact
ggtgatctaaactgtgctcatgaagaaatcgacatctacaatcctgcggggaacaaaaga
agtgctggtttcacaatagaagaaagacaatcatttggagaaaacttcttggagaagggc
tttgtggatacttttagaaagcagcatcctggtgttgttggttatacttattggggttat
cgcagtggtgcacgcaaaaccaatagaggatggagactggactacttcttggtgtctgaa
tcgattgcaggcaatgtccatgattcttacattctccctgatatcagtggcagtgatcat
tgccccattggcattattctcaagctctga
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