Brassica oleracea (wild cabbage): 106293349
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Entry
106293349 CDS
T04124
Name
(RefSeq) exopolygalacturonase clone GBGE184-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe00040
Pentose and glucuronate interconversions
boe01100
Metabolic pathways
Module
boe_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106293349
Enzymes [BR:
boe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106293349
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Motif
Other DBs
NCBI-GeneID:
106293349
NCBI-ProteinID:
XP_013584471
UniProt:
A0A0D3C769
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Position
C5:complement(720555..722350)
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AA seq
417 aa
AA seq
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MANARMLAAKANNTNIGFIIMALVLGSCVANGEYLGGGRELTGNPTVFDITQFGAVGDGR
TNTFKAFLKAWIQVCASPVPATLLVPKGNFLAGPIIFAGPCKSKVTVNVQGTISATTSGF
ATPEWILFERVDNVHLTGPGIIHGRGEAVWAADGCGKKFKCNLPPTSLKFRNIVNLEVSG
ISSVNAKAFHMFLVKTVNVNIHNIKIIAPAESPNTDGIHLSNADNVRILDSFIGTGDDCV
SVGRGSNNVTVERVVCGPGHGLSVGSLGKYPNEEDVSGIHFRNCTMRNTDNGLRIKSWGG
STPSKAVDIHFEDIIMENVKNPIIIDQNYGSRGGESRVAISDVLFKGVRGTTITKDFVQF
MCSKSVPCKGVRVEDVNLNFVGNKGGHQSASGGLIGSLCNNANVILGGKVNFPLCPK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgcaagaatgttagccgctaaggcaaataacactaatattggtttcattata
atggccttggtacttggttcttgcgtggctaacggtgaatatcttggaggcggccgtgaa
cttactggcaaccctaccgtatttgatataactcagtttggagcagtgggagatggtcgc
accaatactttcaaggcgtttttgaaagcatggatccaagtgtgtgcaagtcctgtacca
gcaacgctactagtccctaaaggaaatttcttggctggtccaattattttcgccggtcca
tgcaaaagcaaagtgaccgtcaatgttcaaggcacgatcagtgctacaacaagcggattc
gcaacccctgaatggatcttatttgagcgtgtcgacaatgtccacctcaccggacctggc
ataattcacggaagaggtgaagcagtatgggcagcagatggttgtggcaaaaagtttaaa
tgcaatcttcccccaacgtctctaaaattcagaaacatagtaaatcttgaagtcagcggc
attagctcggtcaacgcaaaggccttccacatgttcttggtgaaaaccgtgaatgtcaac
atccacaacattaagattatcgcccctgctgaaagtcccaacaccgatggtatccatttg
agcaatgccgacaacgttaggatcctagacagttttatagggaccggagacgattgtgtt
tcagtcggtcgtggttccaacaatgtaaccgtcgaacgtgtggtttgtggtcctggacac
ggccttagtgttggtagtcttggtaagtaccccaacgaggaggacgttagcggcattcac
tttaggaactgcacaatgagaaataccgacaatggtcttagaatcaagagttggggtggt
tcgacaccaagcaaggctgtggacattcattttgaagatattatcatggaaaacgtcaag
aacccaatcatcattgaccaaaactatggttcaagaggcggggagtcaagagttgccata
agcgatgtgttgttcaagggtgtaagaggaacaacaattacaaaagattttgttcagttc
atgtgcagcaaatcggtaccgtgtaaaggagtcagagtcgaggatgtgaacttaaacttc
gtaggcaacaaaggaggacatcaatcggcgtcaggtggtttgatcggatctctttgtaac
aacgccaatgttatacttggtggaaaggttaacttcccactgtgtccaaaataa
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