Brassica oleracea (wild cabbage): 106318665
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Entry
106318665 CDS
T04124
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial-like isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106318665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106318665
03016 Transfer RNA biogenesis [BR:
boe03016
]
106318665
Enzymes [BR:
boe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
106318665
Messenger RNA biogenesis [BR:
boe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
106318665
Transfer RNA biogenesis [BR:
boe03016
]
Prokaryotic type
tRNA degradation factors
106318665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
Urease_gamma
Motif
Other DBs
NCBI-GeneID:
106318665
NCBI-ProteinID:
XP_013612194
UniProt:
A0A0D3EFH9
LinkDB
All DBs
Position
C9:48965173..48977254
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AA seq
975 aa
AA seq
DB search
MSSIVRRARSSSLPNFLAWRALGFRTICSGGLGIAPSSSPPASTGIKILESFKEEFEVGS
RVVTLETGKIARFANGSVVLGMDETKVLSTVTCAKSKSPGDFLPLTVDYQEKMFAQGLIP
NTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMANVLSSDGKQDPDILAANAA
SAALMLSDVPWGGPIGVIRLGRIGGEIVVNPTMDELSSSDLHLIYACTRDKTMMIDVQAR
EITEKDLAAALRLAHPEAVKYIDPQIRLAAKAGKQKKEYILSMLSEKTLEKVTDLAAERI
VSVFTDPSRGKFERGEALENIGKDVEKVFEEEGDQESLSILPKAVDTVRKKIVRSRMISE
GFRVDGRHLDEVRPIYCESHHLPALHGSALFSRGDTQVLCTITLGAPGDAQRLDSLVGPP
KKKFMLHYTFPPFCTDEVGKKLGLNRREVGHGTLAEKALLAVMPPEEDFPYTVRINSEVM
ASDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLVTDVDPSSGEIKDYRIVTDILGLE
DHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENARKARLQILDHMEREINSPR
DQQCRLATLKYTNDALRNLIGPMGALKRKIEEETGARLSIDDGTLTIVAKNQAVMDKAQE
KVDYIIGREIVVGGVYKGTVTSIKEYGAFVEFNGGQQGLLHMSELSHEPVSKVSDVLHIG
KYITMMCIDTDVRGNIKLSLKALLPKPTSRPEKLPVVKEAVSVETSSFGEAVASLPSVVE
PPQKSKLAVPAVVIRTAVECDEAEKSSHVDKNTKPKCAATVKPDRKLKSTASKQTVKEDE
TLSSTATEESRDDCGETLTQENKLNCTSLENNSNIVSSSKGKKPSRKEKQSDNEAGESPS
ISARKLKIGTEMTAKVHQIRTHGLVLDLGGGIRGMYKFEGDEETEFEIGDTLQVKCTSFS
SKGIPVMALVDEEDV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgatcgtgagacgagctaggtcatcttctcttccgaacttcctcgcatggcgc
gctttgggtttccgcaccatctgctccggcggattgggcatcgcgccgtctagctcgccg
ccggcctccacgggaatcaaaattctggagtcgtttaaggaggaattcgaagtcggatct
cgggtggtgacgctcgagacggggaagatcgctcgcttcgcaaatggttccgtcgtgctg
gggatggacgagaccaaagttctctccaccgttacttgtgccaagtctaaatctcctgga
gatttcttgcctctcactgttgattatcaagagaagatgttcgctcaaggtttgattcct
aatacgtatatgcgaagagaaggtgcacctaaagagcgggaactgttgtgtggccgcctc
attgataggccaatcagaccattgtttccttctgggttttaccatgaggttcagataatg
gcaaatgttctatcatcggatgggaagcaggatccagatatacttgcagctaatgcagca
tcggctgcgctcatgctgtcggatgttccatgggggggacccattggagtcatcaggtta
ggaaggatcggtggggagattgttgtgaatccaactatggatgagcttagctcaagtgat
cttcatttgatatacgcttgcacaagggataaaactatgatgattgatgttcaagcccgt
gaaatcactgagaaagatctagcagctgctctgagacttgctcatccagaggctgttaag
tacatcgatccccaaattagattggctgcgaaagctgggaaacaaaagaaggagtatata
ttgtccatgctttctgagaaaactttagaaaaagtgactgacttggctgcagagcgtatt
gtatccgtctttaccgatccttcacgtggcaagtttgaacgtggagaggctctagagaac
attggaaaagatgtggaaaaagtatttgaagaagagggcgatcaagaaagcttgagcata
cttccaaaggctgttgatacagtgagaaagaagatagttcgttcaaggatgatatcagag
ggatttcgggtcgacggcagacatcttgatgaagttaggcccatctattgtgaatcgcat
cacctgcctgccttgcatgggtcagcacttttctcacgtggagacactcaggtgctctgt
actatcacacttggagccccaggagatgcacaaaggttggattctcttgttggcccaccg
aagaagaaatttatgcttcactatacctttcctccgttttgtacagatgaagttggaaaa
aaactaggccttaaccggcgtgaagttggtcatggaacacttgctgaaaaggcattgctt
gcagtcatgccccctgaagaagattttccttatacagttcgtataaattcagaagttatg
gcttcagatggatccacgtctatggcaagcgtttgtggaggcagcatggcgttaatggat
gccggaattcctctgcgagctcatgttgcaggagtctccgttggtcttgtcactgacgtt
gatccatcaagtggagaaattaaagactaccgtatagtaaccgatatattgggtttggaa
gatcatctaggagatatggatttcaagattgcgggcacaagaaatggtgtgacggcaatt
caactggatatcaagccagccggaataccattggacatagtttgtgaatcattagaaaat
gcacgtaaagcccgtcttcagattcttgaccatatggagagagaaattaattccccacga
gaccagcaatgccggctagcaactttgaagtacaccaacgatgcacttcgtaacttgatc
ggacctatgggtgccctcaagaggaagattgaagaggaaacaggtgcaaggttgtctatt
gatgatggaacattaactattgttgccaagaatcaggctgtgatggacaaggctcaagaa
aaggttgactacatcattggtcgcgaaatagttgttggtggcgtgtacaaaggcacagtg
acatctataaaagagtacggcgcatttgttgagtttaatggtggtcaacaaggcctacta
catatgtctgagttatctcatgaaccagtctccaaggtttcagatgtattacatattggc
aagtacatcactatgatgtgcatagacaccgatgtccgtggtaacataaagttatccctc
aaagcactgttacccaaaccaacatctcgtcctgaaaaactcccggtggtgaaagaggca
gtctccgtagaaacgtctagtttcggggaggcagttgcaagcctgcccagtgtcgtagag
ccgcctcagaaatctaaattagcagttcctgcagttgtcatccgtactgctgtggaatgt
gatgaggcagagaaatcttctcatgtggacaagaacactaaacctaaatgcgccgcgaca
gtgaagccagaccggaaactcaaatccactgcctctaaacagaccgtgaaggaagatgag
acactcagctccactgctactgaagaaagtcgggatgactgtggtgagacactgacgcaa
gaaaataaactcaattgcacttctcttgaaaacaattctaacatagtatcatcttcaaaa
ggtaagaaaccctctaggaaggagaaacaatcagataacgaggctggagagagtccatcg
attagtgcccggaaactgaaaataggaacagaaatgacagccaaagtccaccagattcga
acgcatggactggttcttgatctaggtggtggaatccgcggtatgtacaaattcgagggc
gatgaggagacagagtttgagattggagacacattgcaggtgaaatgtacaagttttagc
agtaaaggaatccctgtgatggctttggttgatgaagaagatgtttaa
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