Brassica oleracea (wild cabbage): 106319571
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Entry
106319571 CDS
T04124
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106319571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
boe03041
]
106319571
03009 Ribosome biogenesis [BR:
boe03009
]
106319571
Spliceosome [BR:
boe03041
]
Complex A
U1 snRNP components
U1 related factors
106319571
Complex B
106319571
Ribosome biogenesis [BR:
boe03009
]
Eukaryotic type
Pre-60S particles
Helicases
106319571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106319571
NCBI-ProteinID:
XP_013613396
UniProt:
A0A0D3AJ22
LinkDB
All DBs
Position
C2:3382266..3386285
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AA seq
670 aa
AA seq
DB search
MAAATATASTIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPPGLAPPKPSP
APVSSSVQAQQQPSSGFSSGKEEDKYDNDGPKTDSGSRFSEASRSGPMNSSNAASGLGNA
SSGAVVPPPSAAGIEKMSPEAYCRRHEITVTGGQVPPPLMSFEATGFPPELLRELYGAGF
SAPSPIQAQSWPVAMQNRDIVAVAKTGSGKTLGYLIPGFMHLQRVRNDSRMGPTILVLSP
TRELATQIQAEALKFGKSSRISCACLYGGAPKGPQLKEIERGVDIVIATPGRLNDILEMK
RISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIASDLLS
SPAQVNIGNVDELVANKSITQTIEVIPPMEKQRRLEQILRSQEPGSKIIIFCSTKRMCDT
LARNLTRTFGANAIHGDKSQQERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYD
FPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGASQKVPQEVRELATR
GGGMNKFRRWGTPSGGGGGYGDSGYGGRGGGRGDSGYGGRGGSGYGGRGDSGYGGRGDSG
YGGRGGSGYGGRGGGDAGGRGSWSDSGRGGSGWGRERSRSPERFNRAAAAGPSTSSPPRS
FHEAMMMRQK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctacagctactgcttcgacgattcgttacgcgcctgaggatcctaacctc
cctaagccgtggaaaggtcttgtggatagcagaaccgggtacttgtacttttggaatccg
gagactaacgttactcagtacgagagacctcctggtttagctcctcccaaaccttctcct
gctcctgtaagctcttcggttcaggctcagcagcaaccttcttctgggttcagttctggg
aaggaagaggataagtatgacaatgatgggcctaagactgactctggatcaaggtttagt
gaggcaagcagaagtggacctatgaattcaagtaatgctgccagtggactagggaatgct
tcgtctggtgccgtagtacctcctccttccgctgcagggattgaaaaaatgtctccagag
gcctattgccgccgccatgaaattactgtcactggaggtcaagttccaccacctttgatg
tcttttgaagccactggtttccctccagagcttctgcgggagttatacggtgcagggttc
tctgctccaagtccaatccaagctcagtcatggccagttgcgatgcagaacagagacatt
gtagccgttgctaaaactggctctggaaaaactctcggttacttgattccaggcttcatg
catctccagcgtgtccgcaatgactcacgaatgggcccaacgatcttggtgctgtcacct
actagggagctagccacacagatccaagctgaagctttgaaatttggaaagtcatcaaga
atctcctgtgcctgtttgtatggtggagcaccaaagggtcctcagctgaaggaaatagag
agaggtgtcgatatcgtcattgcaacccccgggagattgaacgatatccttgagatgaag
aggatcagtcttcaccaagtgtcttaccttgtgctggacgaggctgatagaatgctggac
atggggttcgagcctcagatcaggaagattgtgaacgaggtccccactaagcgtcagact
ctcatgtacacagcgacatggcctaaagaggtcaggaaaatcgcgtctgatctgctttct
agccctgcgcaagtcaacatcggtaacgtcgatgagctcgtcgccaacaagtctatcaca
cagactattgaagtgataccaccgatggagaaacaaagaaggttggagcagatactgcgg
tctcaggagccaggctccaagattataatcttctgttccaccaagaggatgtgtgatact
ctcgcgaggaacttgacgcggacgtttggagctaacgctatacatggagacaagtctcag
caagagagagatgatgtgctgaatcagtttaggagcgggaggactcctgttctcgttgca
accgatgtagctgctcgtggacttgatgttaaagacatcagggtggtggtgaactatgat
ttcccaaatggagtggaggactatgttcataggatcggaagaacgggaagagctggagcg
accggtttggcttacactttcttcggggaccaagatgcaaaacatgcttcggatctgatc
aagatcttggaaggagctagccagaaagtccctcaggaggtccgtgagttggctactcgc
ggtggtggaatgaacaagttccgccgctggggtacaccttctggtggtggtggcggctat
ggtgattctggttatggtggtcgtggtggtggccgtggtgattctggttatggaggtcgg
ggtggttctggttatggaggtcgaggtgattctggttatggtggtcgaggtgattctggt
tatggaggtcgtggtggttcaggttatggtggacgtggaggtggtgatgcaggcgggaga
ggaagctggtcggacagtggtcgtggtggctcgggatggggaagagagagaagccgtagt
cctgagagattcaacagagctgctgccgctggaccgtcgacttcctcaccgcctcgcagc
tttcacgaggctatgatgatgagacagaagtaa
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integrated database retrieval system
